◊
Research
◊ Faculty
◊ Publications
◊ Tools/Databases
◊ PhD students at IBAB
◊ Info for training/projects
|
|
FACULTY
|
|
Prof.
N. Yathindra, Director
Prof. N. Yathindra is Director, Institute of Bioinformatics and Applied
Biotechnology (IBAB). He received his Ph.D. from the Center of Advanced
Study in Biophysics, University of Madras. His postdoctoral work was
carried out at University of Wisconsin, Madison. Prof. Yathindra has
served as Chairman, School of Physical Sciences and Dean-Academic at
University of Madras. His research involves the use of computational
approaches to study structure and function of biological
macromolecules. He is a Fellow of the
Indian Academy of Sciences. More...
|
|
|
Dr.
Kshitish Acharya, obtained his doctoral degree from
the Banaras Hindu University, Varanasi. He did post-doctoral research
at the Indian Institute of Science, Bangalore and then at the
University of Virginia. Thereafter, he was heading the research and
production unit of a growing biotechnology company in India. Dr.
Kshitish is basically a reproductive biologist and has used molecular
biology extensively in his research work. Though he is particularly
interested in studying differential transcriptional regulation in
reproductive vs. other systems, he has multiple research interests and
enjoys flexibility in technical approaches. He has been with IBAB since
March 2003. Apart from teaching
and research, he was the key person handling the very popular
Postgraduate programme in Biotechniques. He is currently heading the
short term courses. More...
|
| |
|
 |
Dr. Shipra Agrawal has ten years of
research and teaching experience in the areas of plant biotechnology
and bioinformatics. Previously she was a faculty member at the Indian
Institute of Information Technology (IIIT) Allahabad.
As a post-doctoral fellow at
the Jawaharlal Nehru Center of Advanced and Scientific Research
(JNCASR) Bangalore, her research was in the area of motif based
characterization of human meiotic recombination hotspots,
transcriptional regulation of the human PC4 gene, computational
analysis work on chromatin remodeling factors and modeling and
simulation studies on mouse importin-4. In addition, she also worked on
micro-RNA precursor prediction from non-coding RNA. More...
|
 |
Dr.
Andreas Bender was the lead faculty for the Postgraduate
Cheminformatics Course at IBAB several times. Dr.
Bender's work comprises descriptor and classification algorithm
development and evaluation, as well as applications to predict
biological targets for small molecules. Andreas received his PhD from
the University of Cambridge (UK) developing virtual screening methods
working with Prof. Robert C. Glen at the Unilever Centre for Molecular
Informatics / Department of Chemistry. He was a Cambridge Gates Scholar
and a member of Darwin College while at Cambridge and is the author of
more than 30 publications in the cheminformatics and bioinformatics
fields and referee for several journals in the area. Further
information can be found at http://www.andreasbender.de.
|
 |
Dr. Bibha Chaudhury
received her PhD from BHU, Varanasi. Subsequently she did post-doctoral
work at the Institute for Genetic Medicine, USC, Los Angeles. She
taught at the Manipal institute of Regenerative Medicine, Manipal
University and joined IBAB in April 2011. Her work focuses on
understanding the molecular mechanisms involved in specification and
differentiation of cardiomyocytes using embroyonic stem cells. The role
of cell-cell interaction, signalling molecules and micro-RNA during
differentiation of embroyonic stem cells to multiple cell lineages will
be investigated. |
| |
|
 |
Dr. Srinivas V. Kaveri, adjunct
faculty at IBAB, is a Director of Research at INSERM in Paris. A
veterinarian by training, he received his PhD from the Pasteur
Institute and did post-doctoral work at the University of California.
He leads a team at INSERM at the Centre de Recherche des Cordeliers in
Paris. His work relates to the molecular mechanisms of immunopathology
and immunotherapy. Aside from over 150 publications, he has several
patents to his name. He has received research grants from several
national and international bodies, and has received awards from CNRS
and INSERM.
|
 |
Dr.
Ashwini Mathur, adjunct faculty at IBAB, received his Ph.D. in
Biostatistics from
University of California, Berkeley and subsequently taught as a faculty
member at University of California, San Francisco before joining GSK
(US) in 1996. He headed GSK's Biometrics operations in India till 2006
and now heads the Biostatistics and Statistical Reporting operation of
Novartis in India. He is a member of American Statistical Association
and Secretary of International Biometrics Society. He has more than 35
medical collaborative papers in international journals, 2 book chapters
and numerous invited lectures, presentations and posters at
international conferences.
|
 |
Dr.
Binay Panda, adjunct faculty at IBAB, received his Ph.D. from
the University of Oxford, UK and was an American Cancer Society
postdoctoral fellow at the Scripps Research Institute, La Jolla, USA.
Before returning to India to set up Ganit Labs, he co-founded a
molecular diagnostics startup company in the San Francisco bay area
with a focus on early detection of cancer. Prior to that, he worked at
Affymetrix's Santa Clara, California and Tokyo, Japan offices where he
was instrumental in building the company's scientific operations in
Japan. Binay was a visiting researcher at the University of Tokyo,
Japan and taught molecular diagnostics at the University of California,
Santa Cruz extension. Binay is also a visiting professor at the
Mazumdar Shaw Cancer Centre, Narayana Hrudayalaya, Bangalore
and has research and commercialization interest in genomics and
personalized medicine.
|
 |
Prof.
Naren Ramakrishna, adjunct faculty
at IBAB, is an associate professor of computer science and faculty
fellow at Virginia Tech. His research interests are in the areas of
software systems for computational science, data mining, and
information management, especially as they pertain to bioinformatics
applications. He has contributed to the development of software systems
such as Expresso and JigCell that automate tedious aspects of
microarray experiment management and cell cycle modeling, respectively.
His current research focus is the development of novel data mining
techniques that expose important abstractions to biologists for problem
solving and knowledge discovery. Ramakrishnan currently serves on the
editorial board of IEEE Computer. He obtained his Ph.D. in computer
sciences from Purdue University in 1997. More information about his
teaching and research is available at: http://people.cs.vt.edu/~naren.
|
| |
|
 |
Dr.
Gayatri Saberwal, did her PhD in the life sciences at
the Centre for Cellular and Molecular Biology, Hyderabad. She then did
post-doctoral work at at the Weill Medical College of Cornell
University, New York. She has been involved with IBAB since its
establishment in 2001, and has had various responsibilities. Since 2003
she has been spearheading the entrepreneurship activities at the
institute. More... |
 |
Dr.
Subha Srinivasan has a PhD from the Centre of Advanced Study in
Biophysics, University of Madras. Before joining IBAB she was founder
and CEO of Jivan Biologics, a start up company that specializes in
microarray services for alternative splicing. Prior to this Subha
headed the bioinformatics unit at Berlex Biosciences, a fully-owned
subsidiary of Schering AG. She also has 10 years of experience at
Immunex, a Seattle-based biotechnology company where she was hired to
head the molecular modeling group, later assuming the responsibility of
setting up a bioinformatics core facility. Her research areas include
protein structure prediction, homology modeling, gene discovery,
alternative splicing, microarrays and next generation sequencing.
|
 |
Dr. R Srivatsan did his PhD in Physics from TIFR, Mumbai and worked
more than 10 years in the fields of Astronomy and Plasma Physics before
shifting to bioinformatics. Before joining IBAB, he worked in Strand
Life Sciences and Geschickten Biosciences, both in Bangalore, on
systems biology modeling and microarray data analysis. At IBAB his
research activities will be on the development of new algorithms,
analysis methods and software tools in the field of computational
biology.
|
 |
Dr. Rajani Kanth
Vangala, adjunct faculty at IBAB,
did his PhD at the Ludwig Maximilains University, Munich, Germany and
then worked as postdoctoral fellow at Center for Genomics and
Bioinformatics, Karolinska Institute, Stockholm, Sweden and then at
Department of Hematology, Imperial College London, UK. He has since
worked in several companies and was involved in novel technology
developments. His research usually is based on applied biotechnology:
where a specific need in the area of biotechnology is identified,
possible technology solutions are developed. These solutions can result
in technology platforms which can be licensed out to companies or used
in-house to provide solutions. Some of the ongoing projects in his lab
are (a) developing an instrument-free DNA amplification and genotyping
technology; (b) developing metal oxide nanoparticles based technologies
for recombinant DNA applications; (c) developing bio-nanoparticles for
long term stem cell culture and storing and (d) identifying novel
biomarkers for diagnostics, patient stratification, companion
diagnostics and drug development. |
| |
|
 |
Dr.
Shireen Vali, adjunct faculty at IBAB, received her PhD in
Neurobiology from University
of California, Davis in 1997, where she studied the signal transduction
pathway involved in the regulation of a metabolic gene in mouse. She
subsequently did her post-doctoral research at Stanford University
Medical School in cystic fibrosis. At Stanford she also developed
various Online Continued Medical Education (CME) courses. Dr. Vali has
also worked in the field of histopathology at a biotech company. She
joined IBAB as a Faculty Scientist in 2003 and her research interests
include the area of proteomics and studying the repertoire of
multiprotein complexes involved in cellular function and signalling.
She has recently started a company, Cellworks Group Inc. The company
was incubated at IBAB for the first six months.
|
|