◊ Research
◊ Faculty
◊ Publications
◊ Supplementary material
◊ Tools developed
◊ PhD students at IBAB
◊ Info for training/projects
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PUBLICATIONS
S
indicates a publication by an IBAB student. Either work was done
mostly as a student of IBAB, or the student was part of IBAB when the
manuscript was being written.
* indicates book reviews, general articles and letters to the editor.
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2010 |
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Acharya, K., K.. et al.
A novel tissue-specific meta-analysis approach for gene-expression predictions, initiated with a mammalian gene expression testis database
BMC Genomics ,11, 467 (2010) |
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Ladha, J., Donakonda, S., Agrawal, S. et al.
Glioblastoma-specific protein interaction network identifies PP1A and CSK21 as connecting molecules between cell cycle–associated genes.
Cancer. Res.
0008-5472.CAN-10-0819 (in press) |
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Karthigeyan, D., Prasad, S.B., Shandilya, J., Agrawal, S. and Kundu, T.K.
Biology of Aurora A Kinase: Implications in cancer manifestation and therapy.
Med. Res. Rev., Ahead of print (1 March 2010) |
| * |
Saberwal, G.
Bio-business in brief:
A bit about technology transfer
Current
Science, 99, 177-180 (2010) |
| * |
Kapoor, M. and Saberwal, G.
The new crossroads
Biotech
News, 5, 143-145 (2010) |
| * |
Saberwal, G.
Bio-business in brief:
The debate over biosimilars
Current
Science, 98, 1575-1578 (2010) |
| * |
Saberwal, G.
Grants officers on deputation to national research laboratories
Current Science, 98, 999 (2010) |
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Selvi, B.R., Batta, K., Kishore, A.H., Mantelingu, K., Varier, R.A., Balasubramanyam, K., Pradhan, S.K., Dasgupta, D., Sriram, S. Agrawal, S. and Kundu, T.K.
Identification of a novel inhibitor of co-activator associated arginine methyl transferase 1 (CARM-1)-mediated methylation of histone H3-Arg 17.
J. Biol. Chem., 285, 7143-7152 (2010) |
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Jeevitesh, M.S., Behera, N., Jose, J., Kant, K. and Dey, A.
Higher accuracy protein multiple sequence alignment by stochastic algorithm
Nature Precedings |
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2009 |
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Sengupta, U, Ukil, S., Dimitrova, N. and Agrawal, S.
Expression-based network biology identifies alteration in key regulatory pathways of Type 2 diabetes and associated risks/complications.
PLoSOne, 4 (12) e8100 (2009) |
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Saberwal, G.
Drug development in India: What does the future look like?
Contemporary Perspectives: History and Sociology of South Asia, Ed. N Tyabji, 3, 293-309 (2009) |
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Saberwal, G.
A long march
Biotech News, IV, 68-69, 75 (2009) |
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Grover, R., Candeias, M., Fahraeus, R. and Das, S.
p53 and little brother p53/47-linking IRES activities with protein functions.
Oncogene, 28, 2766-2772 (2009) |
| * |
Saberwal, G.
Bio-business in brief:
The pradox of being a drug company
Current Science, 97, 623-625 (2009) |
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Ravindra, K.C., Selvi, B.R., Arif, M. , Ashok Reddy, B.A., Thanuja, G.R., Agrawal, S., Pradhan, S.K., Nagashayana, N., Dasgupta, D. and Kundu, T.K.
Inhibition of Lysine Acetyltransferase KAT3B/p300 activity by a naturally occurring hydroxynaphthoquinone, Plumbagin.
J. Biol. Chem, 284, 24453-24464 (2009) |
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Saberwal, G.
Seeding a skilled workforce.
Nature
Biotechnology, 27,773-775 (2009) |
| * |
Acharya, K.
Book review: Career development in bioengineering and biotechnology
By Madhavan, G., Oakley, B. and Ken, L. (eds)
Springer Science + Business Media (New York)
Current Science, 96, 293 (2009) |
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Sebastian, T.E., Chandra Bindu, Y. and Saberwal, G.
Patent holdings of US biotherapeutic companies in major markets.
Drug Discovery Today, 14, 442–445 (2009) |
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Arif, M., Pradhan, S.K., Thanuja G R, Vedamurthy, B.M., Agrawal, S., Dasgupta, D. and Kundu, T.
Mechanism of p300 specific histone acetyltransferase inhibition by small molecules.
J. Med. Chem., 52, 267–277 (2009). |
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Saberwal, G.
The proposed 4-year B.S. programme
Current Science, 96, 445-446 (2009) |
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Sundaramoorthy, S., Chandra Bindu, Y. , Mehdiratta, R. and Saberwal, G.
The US patent holdings of homegrown Indian biotech and pharma companies.
Current Science, 96, 252-259 (2009) |
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2008 |
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Acharya, K.K., Kasliwal, G. and Haritha, H.
How do you choose your literature search tool(s)?
Nature Precedings |
| S |
Alva, V., Syamala Devi, D P, Sowdhamini, R.
COILCHECK: an interactive server for the analysis of interface regions in coiled coils
Protein and Peptide Letters,15, 33-38 (2008) |
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Ramakrishnan, N. and Bhalla, U.S.
Memory switches in chemical reaction space.
PLoS Comp. Biol., 4: e1000122 (2008) |
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Agrawal, S., Dimitrova, N., Nathan, P., Udaykumar, K., Sailakshmi, S, Sriram, S, Nair, M. and Sengupta, S.
T2D-Db: An integrated platform to study the molecular basis of Type 2 diabetes.
BMC Genomics, 9, 320 (2008) |
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Parida, D.K, Mehdiratta, R. and Saberwal, G.
How many patents does a bio-therapeutics company need?
Nature Biotechnology, 26, 763-766 (2008) |
| * |
Devaguptapu, S, Mehdiratta, R and Saberwal, G
Bio-business in brief: The case of Cytokinetics Inc.
Current Science, 94, 1576-1581 (2008) |
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Kishore H, Vedamurthy BM, Mantelingu K, Agrawal, S, Reddy BA, Roy S, Rangappa K and Kundu TK.
Specific small-molecule activator of aurora kinase a induces autophosphorylation in a cell-free system.
J Med Chem., 51, 792-797(2008). |
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Sai Lakshmi, S. and Agrawal, S.
piRNABank: A web resource on classified and clustered piwi interacting RNAs
Nucleic Acids Research, 36, D173-7 (2008). |
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2007 |
| * |
Mehdiratta, R., Parida, D. K. and
Saberwal, G.
Bio-business in brief: The challenges of clinical trials
Current Science, 93, 1367-1375 (2007) |
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Mehdiratta, R. and
Saberwal, G.
Bio-business in brief:
Many a monoclonal.
Current Science, 93, 789-796 (2007) |
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Mehdiratta, R. and
Saberwal, G.
Bio-business in brief:
The case of conotoxins.
Current Science, 92, 39-45 (2007) |
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2006 |
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Agrawal, S. , Chetan, K. and Rao, M R S.
CREMOFAC - a database of chromatin remodelling factors
Bioinformatics, 22, 2940-2944 (2006). |
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Rathinavelan, T and
Yathindra N
Base triplet nonisomorphism
strongly influences DNA triplex conformation: Effect of nonisomorphic G*GC and A*AT triplets and bending of DNA triplexes.
Biopolymers, 82,
443-461 (2006) |
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Acharya, K.K.,
Govind, C.K., Shore, A.N., Stoler, M.H., Reddi, P.P.
cis-Requirement
for the maintenance of round spermatid-specific
transcription.
Dev.
Biol., 295, 781-790 (2006) |
| * |
Acharya K. K.
The biotech-bioinfo
interface in the context of education and growth of
the biotechnology industry in India today.
Biovistas, 1, 7-13 (2006)
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Saberwal, G
New pharma-biotech company formation in India
Nature
Biotechnology, 24,
499-501 (2006) |
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2005 |
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Rathinavelan, T and
Yathindra N
Molecular dynamics
structures of peptide nucleic acid DNA hybrid in the
wild-type
and mutated alleles
of Ki-ras proto-oncogene
FEBS
Journal, 272,
4055-4070 (2005) |
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Sreekumar, A.,
Acharya, K.K., Lalitha, H.S., Indi, S.S., Bali, P. and Seshagiri, P.B.
Germ cell-specific localization of immunoreactive riboflavin carrier protein in the male golden hamster: appearance during spermatogenesis and role in sperm function.
Reproduction, 129, 577-587
(2005) |
*
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Yathindra N
M. Sundaralingam (1931-2004): a distinguished nucleic acid researcher.
Acta. Cryst., D61,
845-849 (2005) |
| S |
Rajalalitha, P and
Vali, S
Molecular pathogenesis of oral submucos fibrosis - a collagen metabolic
disorder
J. Oral Pathol.
Med., 34, 321-328 (2005) |
*
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Saberwal, G
English composition as a professional skill
Current Science, 88, 848 (2005) |
| S |
Kant, R
Sweet proteins – Potential replacement for artificial low calorie
sweeteners
Nutrition
Journal, 4, 5 (2005) |
| S |
Sandhu, K S and
Acharya, K,
ExPrimer: To design primers from exon-exon junctions
Bioinformatics,
21, 2091
(2005) |
| S |
Kant, R, Rajasekaran,
M B and Suryanarayanarao, R
Sweet and taste
modifying proteins - Comparative modeling and docking
studies
of curculin,
mabinlin, miraculin with the T1R2-T1R3 receptor
Internet Electron J.
Mol.Des., 4,
106-123 (2005) |
*
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Venkatesh, S and
Bansal, M
Role of informatics in biodiversity conservation: overview of available
resources, In Biodiversity, Status
and Prospects (Eds. P. Tandon, M. Sharma and R. Swarup)
Narosa Publishing House, New Delhi, 134-145 (2005) |
S
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Rekha, N,
Machado, S
M, Narayanan, C, Krupa, A and Srinivasan, N
Interaction interfaces of protein domains are not topologically
equivalent across
families within superfamilies: Implications for metabolic and
signalling pathways
Proteins, 58,
339-53 (2005) |
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2004 |
*
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Saberwal, G
Biotechnology incubation in India.
'Business
incubation: Initiatives in India' Ed. R. K. Lagu brought
out by NSTEDB, DST (2004) |
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Behera, N and Nanjundiah,V
Phenotypic plasticity can potentiate rapid evolutionary change
Journal of
Theoretical Biology, 226,
177-184 (2004) |
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Yamamura, Y, Higashi
M, Behera, N & Wakano, J Y
Evolution of mutualism through spatial effect
Journal of
Theoretical Biology, 226,
421-428 (2004) |
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Kanhere, A and Bansal, M
DNA bending and curvature: A turning point in DNA function
Proc. Indian
Acad. Sci., B70,
239-254 (2004) |
*
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Venkatesh, S and Bansal, M
Role of informatics in food biotechnology and safety, S. Venkatesh and
M. Bansal
Indian Food
Industry, 23, 32-36
(2004) |
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2003 |
*
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Bansal, M
DNA structure: Revisiting the Watson-Crick double helix
Current Science,
85,
1556-1563 (2003) |
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Madhumalar, A and
Bansal, M
Sequence dependent structural features of A3T3 vs(AT)3 from molecular
dynamics study
Recent Trends
in Biophysical Research (ed. N. Maiti), Calcutta, pp. 10-16
(2003) |
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Madhumalar, A
and
Bansal, M
Structural insights into the effect of hydration and ions on
A-tract DNA: A molecular dynamics study
Biophysics
Journal, 85, 1805-1816
(2003) |
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Venkatesh, S
and
Bansal M
Role of informatics in biodiversity conservation: overview of available
resources
Proc. of
the 72nd Annual Session & National Symposium on Biodiversity
(2003) |
*
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Bansal, M and Sastri, S
Bioinformatics training - An Indian experience
Web03 Handbook
(2003) |
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Kanhere, A and
Bansal, M
An assessment of three dinucleotide parameters to predict DNA curvature
by
quantitative comparison to experimental data
Nucleic Acids
Research, 31, 2647-2658
(2003) |
*
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Ghosh, A and
Bansal,
M
A glossary of DNA structures from A to Z
Acta Cryst.,
D59,
620-626 (2003) |
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Behera, N
Book Review: Molecular Systematics and Evolution: Theory and Practice.
R. DeSalle, G. Giribet and W. Wheeler (eds)
Birkhauser Verlag, P.O. Box 133, CH-4010 Basel, Switzerland
Current Science,
84,
99-100 (2003) |
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2002 |
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Saberwal, G
Institute of Bioinformatics and Applied Biotechnology: Bioinformatics
training with a difference
Current Science,
83, 794
(2002) |
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