The faculty of IBAB publish their research and other thought pieces in some of the best journals, nationally and internationally. For an institute with big commitments to teaching it has been a remarkable achievement and this has allowed the institute to gain considerable recognition among its peers

  1. Murugesan K, Srinivasan P, Mahadeva R, Gupta CM, Haq W
    Tuftsin-Bearing Liposomes Co-Encapsulated with Doxorubicin and Curcumin Efficiently Inhibit EAC Tumor Growth in Mice
    International Journal of Nanomedicine , Nov 12;15, 10547–10559 (2020)
  2. Davuluri S, Bajpai K A, Thirumurugan K, Acharya KK
    The molecular basis of gender disparities in smoking lung cancer patients
    Life Sci, Dec 21;118927 (2020)
  3. Rubio A, Ghosh S, Mülleder M, Ralser M and Mata J
    Ribosome profiling reveals ribosome stalling on tryptophan codons and ribosome queuing upon oxidative stress in fission yeast.
    Nucleic Acids Research, gkaa1180, (2020)
  4. Kumar V, Mouliganesh S, Sarkar P, Acharya KK, Thirumurugan K
    Dynamics of HOX gene expression and regulation in adipocyte development
    Gene, Nov 13;145308.2020 (2020)
  5. Mondal P, Natesha J, Abdul Salam A A, Thiyagarajan S and Meeran S M
    Traditional Medicinal Plants against Replication, Maturation and Transmission Targets of SARS-CoV-2: Computational Investigation
    J. Biomol. Struct. Dyn. Nov 5;1-18 (2020)
  6. Chida Razia A​​,  Ravi S​,  Jayaprasad S​​,  Paul K,  Saha​  J​, Suresh​ C,  Whadgar S​, Kumar N​,  Rao K R,  Ghosh C​, Choudhary B,  Subramani​ S​, Srinivasan S
    A near-chromosome level genome assembly of Anopheles stephensi
    Front. Genet., doi: (2020)
  7. Deb S, Suvratha J,  Ravi S,  Rao K R,  Whadgar S,  Hariharan N,  Dixit S,  Sunil M,  Choudhary B,  Stevanato P,  Ramireddy E,  Srinivasan S
    Classification of Grain Amaranths Using Chromosome-Level Genome Assembly of Ramdana, A. hypochondriacus
    Front. Plant Sci. 11:579529. doi: 10.3389/fpls.2020.579529 (2020)
  8. Sruthi U, Snehal A, Thiyagarajan S and Padmanabhan B
    Identification of a repurposed drug as an inhibitor of Spike protein of human coronavirus SARS-CoV-2 by computational methods
    J. BioSci45:130 (2020)
  9. Nirgude S,  Mahadeva R ,  Koroth J,  Kumar S ,  Kumar S K,    Gopalakrishnan V,   Karki S S, and Choudhary B
    ST09, A Novel Curcumin Derivative, Blocks Cell Migration by Inhibiting Matrix Metalloproteases in Breast Cancer Cells and Inhibits Tumor Progression in EAC Mouse Tumor Models
    Molecules, 25(19), 4499 (2020)
  10. Bajaj R, Ambaru B, Gupta CM
    Emerging Functions of Actins and Actin Binding Proteins in Trypanosomatids
    Frontiers in Cell and Developmental Biology, doi:https://10.3389/fcell.2020.587685 (2020)
  11. Subramanya HS, Kumari S
    Network pharmacology study of Curcuma longa L.: potential target proteins and their functional enrichment analysis
    BMC Res Notes, doi: (2020)
  12. Kumar M, Martin A,  Nirgude S, Chaudhary B, Mondal S,  Sarkar A
    Quinacrine inhibits GSTA1 activity and induces apoptosis through G1/S arrest and generation of ROS in human non-small cell lung cancer cell lines
    Oncotarget, 11(18): 1603–1617 (2020)
  13. Hudson B S, Kolte V, Khan A and Sharma G.
    Dynamic tracking of variant frequencies depicts the evolution of mutation sites amongst SARS-CoV-2 genomes from India.
    Journal of Medical Virology, doi: (2020)
  14. Parlikar A, Kalia K, Sinha S, Patnaik S, Sharma N, Vemuri SG, Sharma G.
    Understanding genomic diversity, pan-genome, and evolution of SARS-CoV-2.
    PeerJ. doi: (2020)
  15. Islam ST, My L, Jolivet NY, Belgrave AM, Fleuchot B, Brasseur G, Faure LM, Sharma G, Lemon DJ, Saidi F, Fiche JB, Bratton BP, Singer M, Garza AG, Nollmann M, Shaevitz JW, Mignot T.
    CglB adhesins secreted at bacterial focal adhesions mediate gliding motility.
    bioRxiv. doi: (2020)
  16. Islam ST, Vergara Alvarez I, Saïdi F, Guiseppi A, Vinogradov E, Sharma G, Espinosa L, Morrone C, Brasseur G, Guillemot JF, Benarouche A, Bridot JL, Ravicoularamin G, Cagna A, Gauthier C, Singer M, Fierobe HP, Mignot T, Mauriello EMF.
    Modulation of bacterial multicellularity via spatio-specific polysaccharide secretion.
    PLoS Biology. doi: (2020)
  17. Balasubramanian R and Hegde SR
    Integrating multi-omics data to investigate pseudogene expression in Mycolicibacterium smegmatis
    Gene doi: 10.1016/j.gene.2020.144908 (2020)
  18. Kumari, S. Mohan, A. and Saberwal, G
    Hidden duplicates: 10s or 100s of Indian trials, registered with, have not been registered in India, as required by law.
    PLoS One 15(6): e0234925 (2020)
  19. Saberwal, G.
    Breaking all the rules, at lightning speed (Editorial)
    Current Science 119, 7- 8 (2020)
  20. Ambaru B, Gopalsamy A, Tammana TVS, Subramanya HS, Gupta CM
    Actin sequestering protein, profilin, regulates intracellular vesicle transport in Leishmania
    Molecular & Biochemical Parasitology 238, 111280 (2020)
  21. Bajaj R, Ambaru B, Gupta CM
    Deciphering the role of UBA-like domains in intraflagellar distribution and functions of myosin XXI in Leishmania.
    PLoS One, 15(4):e0232116 (2020)
  22. Viswanathan V,  Thiyagarajan  S, Erbe V, Raghunathan S, Rajendran V, Siddaramappa S
    Characterization of Heumann’s pigmented and non-pigmented strains of [Pseudomonas] Sphingomonas echinoides
    Biologia 75;1445-1453 (2020)
  23. Ami VKG, Balasubramanian R, Hegde SR
    Genome-wide identification of the context-dependent sRNA expression in Mycobacterium tuberculosis.
    BMC Genomics, 21(1):167. doi: 10.1186/s12864-020-6573-5 (2020)
  24. Acharya KK
    Developing bio-technical reliability among future researchers and industrial work-force in developing countries: a success story
    bioRxiv 10.1101/2020
  25. Alka M, Shatakshee Chatterjee, Parchure A, Mahantesh S, Sravanthi Davuluri, Arun Kumar AR, Avinash T, Padma M, Premalata CS, Mahua Sinha, Anup Chugani, Vishnu Priya R, Acharya KK, Jayshree R.S
    Natural Killer Cell transcriptome during primary EBV infection and EBV associated Hodgkin Lymphoma in children – a preliminary observation in Immunobiology.
    Immunobiology 1:151907. doi: 10.1016/j.imbio.2020.151907 (2020).
  26. Kumar Bajpai A, Davuluri S, Tiwary K, Narayanan S, Oguru S, Basavaraju K, Dayalan D, Thirumurugan K, Acharya KK.
    Systematic comparison of the protein-protein interaction databases from a user’s perspective.
    J Biomed Inform. Jan 27:103380. doi: 10.1016/j.jbi.2020.103380. (2020)
  27. Hegde SR
    Computational Identification of the Proteins associated with Quorum sensing and Biofilm formation in Mycobacterium tuberculosis.
    Frontiers in Microbiology Volume 10: doi: 10.3389/fmicb.2019.03011 (2020)
  28. Nuttall RA, Sharma G, Moisander PH.
    Draft Genome Sequence of Marinobacter hydrocarbonoclasticus NCT7M, Obtained from the Microbiome of a Marine Copepod
    Microbiology Resource Announcements, 9 (11) e01459-19 (2020); DOI: 10.1128/MRA.01459-19 (2020)
  29. Lindner, P, Paul, S, Eckstein, M, Muenzner, J, Ahmed P H, Brabletz, T, Vera, J, Hartmann, A, Mahadevan, V, Stock, S
    EMT transcription factor ZEB1 alters the epigenetic landscape of colorectal Cancer cells.
    Cell Death and Disease 11: 147 (2020)
  30. Pillamarapu M, Mohan A and  Saberwal G
    Response to the Letter on: “An analysis of deficiencies in the data of interventional drug trials registered with Clinical Trials Registry – India”.
    Trials 21: 39 (2020).
  1. Pillamarapu, M., Mohan, A. and Saberwal, G.
    An analysis of deficiencies in the data of interventional drug trials registered with Clinical Trials Registry – India.
    Trials 20: 535 (2019).
  2. Balagannavar G, Basavaraju K, Bajpai K.A, Sravanthi D, Kannan S1, Vasan SS, Madhusudhan M, Chandrasekhar Darshan S, Chitturi N, Balagannavar V,Oguru S, and Acharya K K
    Listing candidate diagnostic markers and transcriptomic exploration of the molecular basis of a type of male infertility (Non-Obstructive Azoospermia), via next generation sequencing methods
    bioRxiv (2019)
  3. Vadivel K, Schreuder HA, Liesum A, Schmidt AE, Goldsmith G, Bajaj SP
    Sodium-site in serine protease domain of human coagulation factor IXa: evidence from the crystal structure and molecular dynamics simulations study.
    J Thromb Haemost. Apr;17(4):574-584 (2019)
  4. Ahmad E, Hegde SR and Nagaraja V
    Revisiting intrinsic transcription termination in mycobacteria: U-tract downstream of secondary structure is dispensable for termination.
    Biochem Biophys Res Commun. 2019 Nov 20. doi: 10.1016/j.bbrc.2019.11.062.
  5. Abbey D, Singh G, Verma  I, Derebail S, Kolkundkar U, Chandrashekar DS, Acharya KK, Vemuri MC and Seshagiri PB
    Successful derivation of an induced pluripotent stem cell line from a genetically nonpermissive enhanced Green Fluorescent Protein-transgenic FVB/N mouse strain.
    Cellular Programming 21 (5): 270-284 (2019)
  6. Sinha, M et al.
    Pro-oncogenic, intra host viral quasispecies in occult Hepatitis B Virus infected Diffuse large B cell lymphoma patients.
    Scientific Reports. 14516 (2019)
  7. Rani H, Mahadevan V
    Histone and DNA Methylome in Neuro degenerative, Neuropsychiatric and Neuro developmental Disorders,
    The DNA, RNA, and Histone Methylomes (2019) Springer Nature, 63-102.
  8. Siddaramappa S, Narjala A, Viswanathan V, Maliye C, and  Lakshminarayanan R.
    Phylogenetic insights into the diversity of Chryseobacterium species
    Access Microbiology 2019; 1 DOI 10.1099/acmi.0.000019
  9. Whitfield D L, Sharma G, Smaldone G T and Singer M.
    Peripheral rods: a specialized developmental cell type in Myxococcus xanthus.
    Genomics, 2019, Available online 9 October 2019
  10. Nuttall RA, Sharma G, Moisander PH.
    Draft genome sequence of Vibrio cyclitrophicus NCT10V from the microbiome of a marine copepod.
    Microbiology Resource Announcements Volume 8 Issue 44 e01208-19 (2019).
  11. Parales R, Sharma G, Zhang X, Subuyuj G, Langner J, Wright M, Ditty J and Dawson S,
    Draft Genome Sequence of the Caffeine-Degrading Methylotroph Methylorubrum populi PINKEL
    Microbiology Resource Announcements Nov; 8(47): e01300-19 (2019).
  12. Berglar AV, Vembar SS.
    Past, Present and Future of Malaria Prevalence and Eradication in the Light of Climate Change.
    Encyclopedia of Environmental Health (Second Edition) Pages 49-67 (2019)
  13. Gopalakrishnan V, Dahal S, Radha G, Sharma S, Raghavan SC, Choudhary B.
    Characterization of DNA double-strand break repair pathways in diffuse large B cell lymphoma.
    Mol Carcinog. 58(2):219-233 (2019).
  14. Pandey M, Gopalakrishnan V, Swarup H A, Kumar S, Nambiar M, John F, Radha G, Jose A E, Vartak S V, Sebastian R, Srivastava M, Choudhary B, Mantelingu K, Karki S S, Raghavan S C
    Water soluble version of SCR7-pyrazine inhibits DNA repair and abrogates tumour cell proliferation.
    J Radiat Cancer Res.,10:27-43 (2019).
  15. Jinsha K, Nirgude S, Gopalakrishnan V, Shweta S, Raghunandan M, Kumar S, Karki S, Choudhary B.
    Investigation of anti-cancer and migrastatic properties of novel curcumin derivatives on breast and ovarian cancer cell lines.
    BMC Complement. Altern. Med. 19:273 (2019)
  16. Berenice M, Mukherjee S, Wellington D, Das J, Khakoo S.
    Spatial Clustering of Receptors and Signaling Molecules Regulates NK Cell Response to Peptide Repertoire Changes.
    Frontiers in Immunology 10: 605 (2019)
  17. Huebner, K, Prochazka, J,Mahadevan, V, Schneider-Stock R
    Activating Transcription Factor 2 (ATF2): inluence in cancer progression
    Mutagenesis. gez041, 2019
  18. Choudhury M. C. and Saberwal, G.
    The origins, achievements, and challenges of orphan medicinal product organizations in India: An interview-based study.
    Orphanet J Rare Dis. 14, 241 (2019).
  19. Sruthi Unni, S. Thiyagarajan, M. M. Srinivas Bharath, and B. Padmanabhan
    Tryptophan Oxidation in the UQCRC1 Subunit of Mitochondrial Complex III (Ubiquinol-Cytochrome C Reductase) in a Mouse Model of Myodegeneration Causes Large Structural Changes in the Complex: A Molecular Dynamics Simulation Study.
    Sci. Rep., 9:10694 (2019).
  20. Trebbi, D., Ravi, S., Broccanello, C., Chiodi, C., Francis, G., Oliver, J., Mulpuri, S., Srinivasan, S., Stevanato, P.
    Identification and validation of SNP markers linked to seed toxicity in Jatropha curcas L.
    Scientific Reports 9:10220 (2019)
  21. Murugesan, K., Koroth, J, Padma Priya, Singh, A. Mukundan,S., Karki, S. S., Choudhary, B. and Gupta, C. M.
    Effects of green synthesised silver nanoparticles (ST06-AgNPs) using curcumin derivative (ST06) on human cervical cancer cells (HeLa) in vitro and EAC tumor bearing mice models.
    International Journal of Nanomedicine  2019:14 .
  22. Shukla, H. G., Bawa, P.S. and Srinivasan, S.
    hg19KIndel: Ethnicity normalized human reference genome.
    BMC Genomics 6;20(1):459 (2019)
  23. Prabaharan C, Kandavelu P, Packianathan C, Rosen BP4, and Thiyagarajan S
    Structures of two ArsR As(III)-responsive transcriptional repressors: Implications for the mechanism of derepression.
    J. Struct. Biol., 207(2):209-217 (2019).
  24. Choudhury M. C. and Saberwal, G.
    The role of patient organizations in the rare disease ecosystem in India: An interview-based study.
    Orphanet J Rare Dis. 14:117 (2019)
  25. Chaturvedi, N, Mehrotra, B, Kumari, S, Gupta, S, Subramanya, H S and Saberwal, G.
    Some data quality issues at
    Trials 20:378 (2019)
  26. Saberwal, G.
    India to power the more widespread use of biosimilars? (Guest Editorial)
    Curr. Sci. 116, 1451–1453 (2019)
  27. Subramanya, H. S. and Saberwal, G.
    India needs more policy research. (Guest Editorial)
    Curr. Sci. 116, 1279–1280 (2019)
  28. Vijayakumari D, Sharma A K, Bawa P, Kumar R, Srinivasan S and Vijayraghavana U.
    Early splicing functions of fission yeast Prp16 and its unexpected requirement for gene Silencing is governed by intronic features.
    RNA Biology  16(6):754-769 (2019)
  29. Choudhuri, M. C., and Saberwal, G.
    Patient advocacy. (Guest Editorial)
    Curr. Sci. 116, 345–346 (2019)
  30. Saberwal G
    Our educational system is unlikely to enable super-power status for India any time soon (Guest Editorial)
    Curr. Sci., 116, 509–510 (2019)
  1. Arjun D V, Pallab Basu P and Mukherjee S.
    Anticipation: an effective evolutionary strategy for a sub-optimal population in a cyclic environment.
    ArXiv:1811.09167 (2018)
  2. Vartak S V, Swarup H A, Gopalakrishnan V, Gopinatha V K, Ropars V, Nambiar M, John F, Radha G, Choudhary B, Mantelingu K, Raghavan S C.
    Autocyclized forms of SCR7 induce cancer cell death by inhibiting nonhomologousendjoining in a ligase IV dependent manner.
    Febs J, 285 (21) 3959-3976 (2018).
  3. Siddaramappa S, Pullela K, Thimmappa B, Devkota R, Bajaj R, Manivannan B, Mahalingam N, Pradeep BE
    Characterization of blaCTX-M sequences of Indian origin and thirteen uropathogenic
    Escherichia coli isolates resistant to multiple antibiotics
    BMC Res Notes, 11:630-636, 2018
  4. Harshan S, Dey P, Raghunathan S
    Effects of rheumatoid arthritis associated transcriptional changes on osteoclast differentiation network in the synovium
    PeerJ, 10.7717/peerj.5743, 2018
  5. de la Roche M, Hamilton C, Mortensen R, Jeyaprakash A A, Ghosh S, Anand PK
    Trafficking of cholesterol to the ER is required for NLRP3 inflammasome activation
    J. Cell Biol, 10.1083/jcb.20170905, 2018
  6. Bawa P, Ravi S, Paul S, Choudhary B, Srinivasan S
    A novel molecular mechanism for a long non-coding RNA PCAT92 implicated in prostate cancer
    Oncotarget, 9:32419-32434, 2018
  7. Saberwal G
    Cuba: A different kind of role model for biotechnology
    Curr. Sci., 115, 1835–1836, 2018
  8. Uma M, Hegde SR, Rao PP, Nagalekshmi K, Gauthami S, Kumar D, Hegde NR
    A novel point mutation (L70P) inactivates poliovirus 3C protease
    Acta Virol, 62(1):68-77, 2018
  9. Panga V, Raghunathan S
    A cytokine protein-protein interaction network for identifying key molecules in rheumatoid arthritis
    PLoS One, e0199530. 10.1371,2018
  10. Saberwal G
    Bio-business in brief: What ails clinical trials?
    Curr. Sci., 115, 1648–1652, 2018
  11. Siddaramappa S, Viswanathan V, Thiyagarajan S, Narjala A
    Genomewide characterisation of the genetic diversity of carotenogenesis in bacteria of the order Sphingomonadales
    Microb. Genom., 10.1099/mgen.0.000172, 2018
  12. Mukherjee S, Saberwal G
    Managing India’s AIDS crisis in the 2000s: Quantitative modeling had impact. (Guest Editorial)
    Current Science 114, 2005–2006 (2018)
  13. Dash SP, Saberwal G
    The bio-incubation boom in India
    Curr. Sci., 115, 228–233, 2018
  14. Hariharan N, Ravi S, Pradeep BE, Subramanyam KN, Choudhary B, Srinivasan S, Khanchandani P
    A novel loss-of-function mutation in HACE1 is linked to a genetic disorder in a patient from India
    Hum Genome Var, 5, 17061; 10.1038/hgv.2017.61.,2018
  15. Mahalakshmi R, Vijayalakshmi M
    Targeting the cancer epigenome: synergistic therapy with bromodomain inhibitors
    Drug Discovery Totday, Vol 23, No1, 2018
  16. Saberwal G
    Regulatory harmonization: a view from India. (Guest Editorial)
    Curr. Sci.,114, 423–424, 2018
  1. Melangath G, Sen T, Bawa P, Kumar R, Srinivasan S,Vijayraghavan U
    Functions for fission yeast splicing factors SpSlu7 and SpPrp18 in alternative splice-site choice and stress-specific regulated splicing
    PLOS ONE, Dec 13; 12(12):e0188159. 10.1038/s41598-017-17102-w., 2017
  2. Sreenivas A, Mahesh KM, Vinodkumar HS, Mukherjee G, Krishnamurthy H, Acharya KK, Bafna UD, Uma DK, Abhishekh B, Krishna S, Parchure A, Murali A, Jayshree RS
    Oestrogen Receptor-α binds the FOXP3 promoter and modulates regulatory T-cell function in human cervical cancer
    Sci Rep, 7(1):17289. 10.1038/s41598-017-17102-w, 2017
  3. Narayanaswamy PB, Baral K, Haller H, Dumler I, Acharya K, Kiyan Y
    Transcriptomic pathway analysis of urokinase receptor silenced breast cancer cells: a microarray study
    Oncotarget, 8 (60), PP 101572-101590, 2017
  4. Tammana D, Tammana TVS
    Chlamydomonas FAP265 is a tubulin polymerization promoting protein, essential for flagellar reassembly and hatching of daughter cells from the sporangium
    PLOS ONE, 10.1371/journal.pone.0185108,2017
  5. Tammana D, Tammana TVS
    Human DNA helicase, RuvBL1 and its Chlamydomonas homologue, CrRuvBL1 plays an important role in ciliogenesis
    Cytoskeleton, 74:251–259, 2017
  6. VijayRaghavan K, Saberwal G
    Bio-business in brief: The case for ambitious action in the public sector
    Curr. Sci., 113, 1841–1845, 2017
  7. Shukla P, Khodade VS, SharathChandra M, Chauhan P, Mishra S, Siddaramappa S,
    Pradeep BE, Singh A, Chakrapani H

    “On demand” redox buffering by H2S contributes to antibiotic resistance revealed by a bacteria-specific H2S donor
    Chem. Sci., 8, 4967–4972, 2017
  8. Ellingford JM, Campbell C, Barton S, Bhaskar S, Gupta S, Taylor RL, Sergouniotis PI, Horn B, Lamb JA, Michaelides M, Webster AR, Newman WG, Panda B, Ramsden SC, Black GC
    Validation of copy number variation analysis fornext-generation sequencing diagnostics
    Eur J Hum Genet, 25, 719–724, 2017
  9. Mahalakshmi R, Husayn Ahmed P, Vijayalakshmi M
    HDAC inhibitors show differential epigenetic regulation and cell survival strategies on p53 mutant colon cancer cells
    Journal of Biomolecular Structure and Dynamics, 1302820, 2017
  10. Saberwal G
    Supporting start-ups (Guest Editorial)
    Curr. Sci., 113, 195–196, 2017
  11. Viswanathan V, Narjala A, Ravichandran A, Jayaprasad S, Siddaramappal S
    Evolutionary Genomics of an Ancient Prophage of the Order Sphingomonadales
    Genome Biol. Evol., 9(3), 646–658, 2017
  1. Kouser K, Lavanya PG, Rangarajan LK, Aacharya K
    Effective Feature Selection for Classification of Promoter Sequences
    PLOS One, 11(12), e0167165, 2016
  2. Karthikeyan S, Bawa P, S Srinivasan
    hg19K: Addressing a significant lacuna in hg19-based variant calling
    Mol Genet Genomic Med, 5(1): 15–20, 2016
  3. Krishnan MN, Dhas K, Nair J, Palve V, Bagwan J, Siddappa G, Suresh A, Kekatpure DV, Kuriakose MA, Panda B
    Minimal DNA methylation signature in oral tongue squamous cell carcinoma links altered methylation with tumor attributes
    Mol. Cancer Res, 10.1158/1541-7786.MCR-15-0395, 2016
  4. Dey P, Panga V, Raghunathan S
    A cytokine signalling network for the regulation of inducible nitric oxide synthase expression in rheumatoid arthritis
    PLOS ONE, 11 (9): e0161306 10.1371/journal.pone.0161306, 2016
  5. Iyer D, Vartak SV, Mishra A, Goldsmith G, Kumar S, Srivastava M, Hegde M, Gopalakrishnan V, Glenn M, Velusamy M, Choudhary B, Kalakonda N, Karki SS,
    Surolia A, Raghavan SC

    Identification of a Novel BCL2 Specific Inhibitor that Binds Predominantly to the BH1 Domain
    FEBS J, 283(18), 3408-37, 2016
  6. Galgalkar S, Siddaramappa S, Kalambur V
    Potentiometric Investigation of the Dynamics of Bacteriophage – Induced Potassium Ion Efflux in Escherichia coli
    Ely J Micro, 1(1): 103, 2016
  7. Pandey M, Kumar S, Goldsmith G, Srivastava M, Elango S, Choudhary B, Karki SS, Raghavan SC
    Identification and Characterization of Novel Ligase I Inhibitors
    Mol Carcinog, 2017 Feb; 56(2):550-566. 10.1002/mc.22516. Epub Jun 27 2016
  8. Mehrotra B, Saberwal G
    Patents protecting biologics or small molecule drugs are litigated, not others awarded to drug discovery companies
    Journal of IP Rights, 21, 149-156, 2016
  9. Kang Y, Brame K, Jetter J, Bothner B, Wang G, Thiyagarajan S, MC Dermott T
    Regulatory Activities of Four ArsR Proteins in Agrobacterium tumefaciens 5A
    Appl Environ Microbiol, 82(12), 3471-80,2016
  10. Goldsmith G, Rathinavelan T, Yathindra N
    Selective preference of parallel DNA triplexes is due to the disruption of Hoogsteen hydrogen bonds caused by the severe nonisostericity between the GGC and TAT triplets
    PLOS ONE, 11(3), 2016
  11. Keezhupalat SM, Naik A, Gupta S, Raghunathan S, Saberwal G
    An analysis of sponsors/collaborators of 69,160 drug trials registered with
    PLOS ONE, 11(2), e0149416. 10.1371/journal.pone.0149416, 2016
  12. Padmanabhan B, Ramu M, Mathur S, Unni S, Thiyagarajan S
    Identification of New Inhibitors for Human SIRT1: An in-silico Approach
    Med Chem, 12(4), 347-61 2016
  13. Siddaramappa S
    Histophilus somni genomics and genetics
    Curr Top Microbiol Immunol, 396:49-70, 2016
  14. Krithika A Shankaran, Shabir Ahmad G,Vijayalakshmi M
    In silico and In vitro evaluation of the anti- inflammatory potential of Centratherum punctatum Cass-A.
    Journal of Biomolecular Structure and Dynamics, 1160840, 2016
  15. Kumar MM, Davuluri S, Poojar S, Mukherjee G, Bajpai AK, Dungarmal BU, Uma Devi K, Kallur PPR, Acharya KK, Jayshree RS
    Role of Estrogen Receptor Alpha in human cervical Cancer Associated Fibroblasts (CAFs): a transcriptomic study
    Tumour Biol, 37(4),4409-20, 2016
  16. Saberwal G
    India’s intellectual property-based biomedical start-ups
    Curr. Sci., 110, 167-171, 2016
  17. Raghavan CS, Choudhary B, Iyer D, Vartak S, Goldsmith G, Karki S, Surolia A
    Novel inhibitors of antiapoptotic Bcl-2 protein Indian patent number: 201641014968
  1. Krishnan NM et al
    Integrated analysis of oral tongue squamous cell carcinoma identifies key variants and pathways linked to risk habits, HPV, clinical parameters and tumor recurrence
    F1000Research, 4: 1215 10.12688, 7302.1, 2015
  2. Nair J, Jain P, Chandola U, Palve V, Vardhan NR, Reddy RB, Kekatpure VD, Suresh
    A, Kuriakose MA, Panda B
    Gene and miRNA expression changes in squamous cell carcinoma of larynx and hypopharynx.
    Genes Cancer, 6 (7-8), 328-40, 2015
  3. Srivastava R, Kajuluri LP, Pathak N, Gupta CM, Sahasrabuddhe AA
    Oligomerization of coronin: Implication on actin filament length in Leishmania.
    Cytoskeleton, 72, 621–632, 2015
  4. Pathak BR, Breed AA, Apte S, Acharya KK, Mahale SD
    Cysteine-rich secretory protein 3 plays a role in prostate cancer cell invasion and affects expression of PSA and ANXA1.
    Mol Cell Biochem, 10.1007/s11010-015-2564-2, 2015
  5. Ganjiwale A, Cowsik SM
    Membrane Induced Structure of Novel Human Tachykinin Hemokinin-1 (hHK1)
    Biopolymer, 103, 702-10 10.1002/bip.22734, 2015
  6. Mathew J, Jagadeesh SM, Bhat M, Udhaya Kumar S, Thiyagarajan S, Srinivasan S.
    Mutations in ARSB in MPS VI patients in India
    Mol Genet Metab Rep, 4, 53-61. 10.1016/j.ymgmr.2015.06.002, 2015
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    GREAM: A Web Server to Short-List Potentially Important Genomic Repeat Elements Based on Over-/Under-Representation in Specific Chromosomal Locations, Such as the Gene Neighborhoods, within or across 17 Mammalian Species
    PLOS ONE, 10(7), 10.1371/journal.pone.0133647, 2015
  8. Duley A, Gowda V, Ganjiwale A, Raghothama S, Ramanathan G
    Effect of methylene group insertions on the structural rigidity of Aib containing helices
    Biopolymer Peptide Science, 10.1002/bip.22691, 2015
  9. Gupta CM, Thiyagarajan S, Sahasrabuddhe AA
    Unconventional actins and actin-binding proteins in human protozoan parasites
    Int. J. Parasitol., 45, 435-447, 2015
  10. Kouser, Rangarajan L, Chandrashekar DS, Acharya KK, Abraham EM
    Alignment free frequency based distance measures for promoter sequence comparison.
    In: Bioinformatics and Biomedical Engineering Third International Conference, IWBBIO 2015, Granada, Spain, April 15-17, Proceedings, Part II; Editors: Ortuño, Francisco, Rojas, Ignacio (Eds.) pp. 183-193, Springer 2015
  11. Bawa P, Zackaria S, Verma M, Gupta S, Srivatsan R, Chaudhary B, Srinivasan S
    Integrative analysis of normal long intergenic non-coding RNAs in prostate cancer
    PLoS One, 10.1371/journal.pone.0122143,2015
  12. Gupta S, Krishnan MN, Panda B
    Survival Signature in Squamous Cell Carcinoma of Head and Neck (HNSCC) And Applications Thereof Provisional patent application, 4316/CHE/2015
  13. Gupta S, Krishnan MN, Panda B
    Biomarkers Of Squamous Cell Carcinoma Of Head And Neck Prognostic Markers of Recurrence In Squamous Cell Carcinoma of Head And Methods Thereof Provisional patent application, 4031/CHE/2015
  14. Panda B
    miRNA Aberration(s) In Squamous Cell Carcinoma of Head And Neck (HNSCC) And Applications Thereof Provisional patent application, 2921/CHE/2015
  15. Panda B, Krishnan MN
    Methylation Signature in Squamous Cell Carcinoma of Head and Neck (HNSCC) And Applications Thereof Provisional patent application, 4888/CHE/2015
  16. Panda B
    Gene Expression Changes in Squamous Cell Carcinoma of Larynx and Hypopharynx and Applications Thereof Provisional patent application, 2969/CHE/2015
  17. Panda B
    Gene Signature in Squamous Cell Carcinoma of Head and Neck (HNSCC) And Applications Thereof Provisional patent application, 2970/CHE/2015
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    A hybrid-computing environment for Burrows-Wheeler alignment for massive amount of short read sequence data.
    IEEE, 188-191 doi: 10.1109/MECBME.2014.6783237 (2014)
  2. Chandola, U, Das, R and Panda, B
    Role of the N6-methyladenosine RNA mark in gene regulation and its implications on development and disease.
    Briefings in Functional Genomics, doi: 10.1093/bfgp/elu039 (2014)
  3. Mrinal Srivastava, Mahesh Hegde, Kishore K. Chiruvella, Jinsha Koroth, Souvari Bhattacharya, Bibha Choudhary & Sathees C. Raghavan
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    Scientific Reports 4 : 6147 DOI: 10.1038/srep06147
  4. Mukherjee, K. Bowman, K.S., Fred A. Rainey, F. A., Siddaramappa, S., Challacombe, J. F. and Moe, W.M.
    Dehalogenimonas lykanthroporepellens BL-DC-9T simultaneously transcribes many rdhA genes during organohalide respiration with 1,2-DCA, 1,2-DCP, and 1,2,3-TCP as electron acceptors.
    FEMS Microbiol Lett, 354, 111–118 (2014)
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    Eur. Chem. Bull., 3, 1086-1087 (2014)
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    Capacities vs. jobs in bioinformatics and biotechnology: a few points to the attention of current students & job-seekers.
    In: Biotech Career Ready Reckoner 2014,
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  7. Sunil, M., Hariharan, A.K., Nayak, S., Gupta, S., Nambisan, S., Panda, B., Choudhary, B. and Srinivasan, S.
    The draft genome and transcriptome of Amaranthus hypochondriacus: A C4 dicot producing high-lysine edible pseudo-cereal.
    DNA Research, 21, 585-602 (2014)
  8. Siddaramappa, S., Challacombe, J. F., Petersen, J. M., Pillai, S. and Fellow, C.R.K.
    Comparative analyses of a putative Francisella conjugative element
    Genome, 57, 137-144 (2014)
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    Acetylated alpha tubulin is reduced in individuals with poor sperm motility.
    Fertility and Sterility, 101: 95-104 (2014)
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    Current Science, 106, 657-658 (2014)
  11. Pattnaik, S., Gupta, S., Rao, A A and Panda, B.
    SInC: an accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data.
    BMC Bioinformatics, 315, 40 (2014)
  12. Saberwal, G.
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    Nature Biotechnology, 32, 106-107 (2014)
  13. Jaroslawski, S. and Saberwal, G.
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    BMC Medical Informatics and Decision Making, 14, 1- 12 (2014)
  14. Behera; Narayan, Sinha; Shruti, Gupta; Rakesh, Geoncy; Ann, Dimitrova; Nevenka
    Evolutionary clustering algorithm. US 8,712,935. April 29, 2014.
  1. Chitturi N, Balagannavar G, Chandrashekar DS, Abinaya S, Srini VS and Acharya KK
    TIPMaP: a web server to establish Transcript Isoform Profiles from reliable Microarray Probes.
    BMC Genomics, 14, 922-931 (2013)
  2. Ganjiwale A, Cowsik SM.
    Molecular recognition of Tachykinin Receptor selective agonists: Insights from structural studies.
    Mini Rev Med Chem. 7 Aug 2013.
  3. Sundararajan, PR, Balaji, PV and Yathindra, N.
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  4. Jain, P. , Krishnan, N.M. and Panda, B.
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    Peer J., 1, e133 (2013)
  5. Ananth, P., Goldsmith, G. and Yathindra, N.
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    RNA, 19, 1038-1053 (2013)
  6. Kumari, S. and Saberwal, G.
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    Asian Biotechnology Development Review, 15, 69-77 (2013)
  7. Bhagwat, S. et al.
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    PLoS One, 8, e58419 (2013)
  8. Jaroslawski, S. and Saberwal, G.
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    BMC Health Services Research, 13, 199-207 (2013)
  9. Saberwal, G.
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    Nature Biotechnology, 31, 104-107 (2013)
  10. Agrawal, S. and Rao, M. R. S.
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    Encyclopedia of Systems Biology, Springer Press, pgs 773-777 (2013)
  11. Agrawal, S. and Rao, M. R. S.
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    Encyclopedia of Systems Biology, Springer Press, pgs 113-118 (2013)
  1. Srivastava, M. et al.
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    Cell, 151, 1474-1487 (2012)
  2. Kaushik, S. Krishnarjuna, B., Raghothama, S., Aggarwal, S. Raghunathan, V. and Ganjiwale, A.
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    Molecular and Biochemical Parasitology. 185, 27-35 (2012)
  3. Panda. B.
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    Indian J. Med. Paediatr. Oncol., 33, 250-252 (2012)
  4. Srinivasan, S, Patil, AH, Verma, M, Bingham, JL and Srivatsan, R.
    Genome-wide profiling of RNA splicing in prostate tumor from RNA-seq data using virtual microarrays.
    J. Clinical Bioinformatics, 2, 21-33 (2012)
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    Novel Levamisole derivative induces extrinsic pathway of apoptosis in cancer cells and inhibits tumor progression in mice.
    PLoS One, 7(9), e43632 (2012)
  6. Krishnan NM, Gaur P, Choudhary R, Rao AA and Panda B
    COPS: A sensitive and accurate tool for detecting somatic copy number alterations using short-read sequence data from paired samples.
    PLoS One, 7(10), e47812 (2012)
  7. Saberwal, G
    Translating academic discoveries
    Current Science, 103, 767-769 (2012)
  8. Krishnan NM, Pattnaik S, Jain P, Gaur P, Choudhary R, et al.
    A draft of the genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica.
    BMC Genomics, 13, 464 (2012)
  9. Vangala, R.K., Singh, L. and Gupta, R.P.
    Bioparishodhana: A novel graphical interface integrating BLAST, CLUSTALW, primer3 and restriction digestion tools.
    Bioinformation, 8, 639-643 (2012)
  10. Chiruvella, K.K., Sebastian, R., Sharma, S., Karande, A.A., Choudhary, B. and Raghavan, S.C.
    Time-dependent predominance of nonhomologous DNA end-joining pathways during embryonic development in mice.
    J. Mol Biol., 417, 197-211 (2012)
  11. Bajpai, A K, Davuluri, S, Chandrashekar, D S, Selvarajan, I, Dinakaran, M and Acharya, K K
    MGEx-Udb: A Mammalian Uterus Database for Expression-Based Cataloguing of Genes across Conditions, Including Endometriosis and Cervical Cancer.
    PLoS One, 7, e36776 (2012)
  12. Venkatachalam, S and Saberwal, G
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    Current Science, 102, 1375-1381 (2012)
  13. Jaroslawski, S and Pai, M
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  14. Patil, A H et al.
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    Current Science, 102, 1111-1116 (2012)
  15. Soby, S, Sebastian, T E and Saberwal, G
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    Asian Biotechnology Development Review, 14, 21-33 (2012)
  16. Soby, S, Kandasamy, M and Saberwal, G
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    Current Science, 102 , 401-404 (2012)
  17. Pattnaik, S et al.
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  18. Marimuthu, G, Kumari, S, Kandasamy, M, Raghunathan, S and Saberwal, G
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    Nature Biotechnology, 30, 50-53 (2012)
  19. Sathees C. Raghavan, Mrinal Srivastava, Subhas S Karki and Bibha Choudhary.
    Compounds as Inhibitor of DNA Double-Strand Break Repair, Methods and Applications thereofRef. IP19597/VJ/ysr. Indian Patent Application Number: 2713/CHE/2012,
  1. Prakash, A, Yogeeshwari, S, Sircar, S and Agrawal, S
    Protein domain of unknown function 3233 is a Translocation Domain of Autotransporter Secretory Mechanism in Gamma proteobacteria
    PLoS One, 6(1), e255570 (2011)
  2. Nambiar, M et al.
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  3. Bateman, A et al.
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  4. Karthigeyan, D, Prasad, S B, Shandilya, J, Agrawal, S and Kundu, T K
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  5. Krishnan, N et al.
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  6. Saberwal, G
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  8. Sebastian, T E, Pattnayak, J P, Soby, S and Saberwal, G
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  9. Srinivasan, S
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    Current Science, 100, 813-814 (2011)
  1. Agrawal, S, Nishant, K T and Rao, M R S
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    Book chapter ISBN: 978-0-9807330-2-0 (Hard cover)
  2. Sebastian, A, Bender, A and Ramakrishnan, V
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  3. Yathindra, N
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  4. Acharya, K K et al.
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  5. Ladha, J et al.
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    Cancer Research, 70, 6437-6447 (2010)
  6. Saberwal, G
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  7. Kapoor, M and Saberwal, G
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  8. Saberwal, G
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  9. Saberwal, G
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  10. Selvi, B R, Batta, K, Kishore, A H, Mantelingu, K, Varier, R A, Balasubramanyam, K, Pradhan, S K, Dasgupta, D, Sriram, S, Agrawal, S and Kundu, T K
    Identification of a novel inhibitor of co-activator associated arginine methyl transferase 1 (CARM-1)-mediated methylation of histone H3-Arg 17
    The Journal of Biological Chemistry, 285, 7143-7152 (2010)
  11. Jeevitesh, M S, Behera, N, Jose, J, Kant, K and Dey, A
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  1. Sengupta, U, Ukil, S, Dimitrova, N and Agrawal, S
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  2. Saberwal, G
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  3. Saberwal, G
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  4. Saberwal, G
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  5. Ravindra, K C, Selvi, B R, Arif, M, Ashok Reddy, B A, Thanuja, G R, Agrawal, S, Pradhan, S K, Nagashayana, N, Dasgupta, D and Kundu, T K
    Inhibition of Lysine Acetyltransferase KAT3B/p300 activity by a naturally occurring hydroxynaphthoquinone, Plumbagin
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  6. Saberwal, G
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  7. Acharya, K K
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    Current Science, 96, 293 (2009)
  8. Sebastian, T E, Chandra Bindu, Y and Saberwal, G
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    Drug Discovery Today, 14, 442-445 (2009)
  9. Arif, M, Pradhan, S K, Thanuja G R, Vedamurthy, B M, Agrawal, S, Dasgupta, D and Kundu, T K
    Mechanism of p300 specific histone acetyltransferase inhibition by small molecules
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  10. Saberwal, G
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  11. Sundaramoorthy, S, Chandra Bindu, Y, Mehdiratta, R and Saberwal, G
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  1. Acharya, K K, Kasliwal, G and Haritha, H
    How do you choose your literature search tool(s)?
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  2. Alva, V, Syamala Devi, D P and Sowdhamini, R
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  3. Ramakrishnan, N and Bhalla, U S
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  4. Agrawal, S, Dimitrova, N, Nathan, P, Udaykumar, K, Sailakshmi, S, Sriram, S, Nair, M and Sengupta, S
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  5. Parida, D K, Mehdiratta, R and Saberwal, G
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  6. Devaguptapu, S, Mehdiratta, R and Saberwal, G
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  7. Kishore H, Vedamurthy B M, Mantelingu K, Agrawal, S, Reddy B A, Roy S, Rangappa K and Kundu T K
    Specific small-molecule activator of aurora kinase a induces autophosphorylation in a cell-free system
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  8. Sai Lakshmi, S and Agrawal, S
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  1. Mehdiratta, R, Parida, D K and Saberwal, G
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  2. Mehdiratta, R and Saberwal, G
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  3. Mehdiratta, R and Saberwal, G
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  1. Agrawal, S , Chetan, K and Rao, M R S
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    Bioinformatics, 22, 2940-2944 (2006)
  2. Rathinavelan, T and Yathindra, N
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  3. Acharya K K
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  4. Saberwal, G
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    Nature Biotechnology, 24, 499-501 (2006)

  1. Rathinavelan, T and Yathindra, N
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  2. Yathindra, N
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  3. Rajalalitha, P and Vali, S
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  4. Saberwal, G
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  5. Kant, R
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  6. Sandhu, K S and Acharya, K K
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  7. Kant, R, Rajasekaran, M B and Suryanarayanarao, R
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  8. Venkatesh, S and Bansal, M
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  9. Rekha, N, Machado, S M, Narayanan, C, Krupa, A and Srinivasan, N
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  1. Saberwal, G
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  2. Kanhere, A and Bansal, M
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    Proceedings of the Indian Academy of Sciences, B70, 239-254 (2004)
  3. Venkatesh, S and Bansal, M
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  1. Bansal, M
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  2. Madhumalar, A and Bansal, M
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  3. Madhumalar, A and Bansal, M
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  4. Venkatesh, S and Bansal, M
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  5. Bansal, M and Sastri, S
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  6. Kanhere, A and Bansal, M
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  7. Ghosh, A and Bansal, M
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  8. Behera, N
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  1. Saberwal, G
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