The faculty of IBAB publish their research and other thought pieces in some of the best journals, nationally and internationally. For an institute with big commitments to teaching it has been a remarkable achievement and this has allowed the institute to gain considerable recognition among its peers

  • 2019-2016
  • 2015-2012
  • 2011-2008
  • 2007-2002
2019
  1. Pillamarapu M, Mohan A and  Saberwal G
    An analysis of deficiencies in the data of interventional drug trials registered with Clinical Trials Registry – India
    Trials (in press)
  2. Trebbi, D., Ravi, S., Broccanello, C., Chiodi, C., Francis, G., Oliver, J., Mulpuri, S., Srinivasan, S., Stevanato, P.
    Identification and validation of SNP markers linked to seed toxicity in Jatropha curcas L.
    Scientific Reports (in press)
  3. Murugesan, K., Koroth, J, Padma Priya, Singh, A. Mukundan,S., Karki, S. S., Choudhary, B. and Gupta, C. M.
    Effects of green synthesised silver nanoparticles (ST06-AgNPs) using curcumin derivative (ST06) on human cervical cancer cells (HeLa) in vitro and EAC tumor bearing mice models.
    International Journal of Nanomedicine (in press).
  4. Shukla, H. G., Bawa, P.S. and Srinivasan, S.
    hg19KIndel: Ethnicity normalized human reference genome.
    BMC Genomics 6;20(1):459 (2019)
  5. Prabaharan  C., Kandavelu  P., Packianathan C., Rosen B.P. and Thiyagarajan S.
    Structures of two ArsR As(III)-responsive transcriptional repressors: implications for the mechanism of derepression.
    J. Struct. Biol  (in press)
  6. Choudhury M. C. and Saberwal, G.
    The role of patient organizations in the rare disease ecosystem in India: An interview-based study.
    Orphanet J Rare Dis. 14:117 (2019)
  7. Chaturvedi, N, Mehrotra, B, Kumari, S, Gupta, S, Subramanya, H S and Saberwal, G.
    Some data quality issues at ClinicalTrials.gov.
    Trials 20:378 (2019)
  8. Saberwal, G.
    India to power the more widespread use of biosimilars? (Guest Editorial)
    Curr. Sci. 116, 1451–1453 (2019)
  9. Subramanya, H. S. and Saberwal, G.
    India needs more policy research. (Guest Editorial)
    Curr. Sci. 116, 1279–1280 (2019)
  10. Vijayakumari D, Sharma A K, Bawa P, Kumar R, Srinivasan S and Vijayraghavana U.
    Early splicing functions of fission yeast Prp16 and its unexpected requirement for gene Silencing is governed by intronic features.
    RNA Biology  16(6):754-769 (2019)
  11. Choudhuri, M. C., and Saberwal, G.
    Patient advocacy. (Guest Editorial)
    Curr. Sci. 116, 345–346 (2019)
  12. Saberwal G
    Our educational system is unlikely to enable super-power status for India any time soon (Guest Editorial)
    Curr. Sci., 116, 509–510 (2019)
2018
  1. Siddaramappa S, Pullela K, Thimmappa B, Devkota R, Bajaj R, Manivannan B, Mahalingam N, Pradeep BE
    Characterization of blaCTX-M sequences of Indian origin and thirteen uropathogenic
    Escherichia coli isolates resistant to multiple antibiotics
    BMC Res Notes, 11:630-636, 2018
  2. Harshan S, Dey P, Raghunathan S
    Effects of rheumatoid arthritis associated transcriptional changes on osteoclast
    differentiation network in the synovium
    PeerJ, 10.7717/peerj.5743, 2018
  3. de la Roche M, Hamilton C, Mortensen R, Jeyaprakash A A, Ghosh S, Anand PK
    Trafficking of cholesterol to the ER is required for NLRP3 inflammasome activation
    J. Cell Biol, 10.1083/jcb.20170905, 2018
  4. Bawa P, Ravi S, Paul S, Choudhary B, Srinivasan S
    A novel molecular mechanism for a long non-coding RNA PCAT92 implicated in
    prostate cancer
    Oncotarget, 9:32419-32434, 2018
  5. Saberwal G
    Cuba: A different kind of role model for biotechnology
    Curr. Sci., 115, 1835–1836, 2018
  6. Uma M, Hegde SR, Rao PP, Nagalekshmi K, Gauthami S, Kumar D, Hegde NR
    A novel point mutation (L70P) inactivates poliovirus 3C protease
    Acta Virol, 62(1):68-77, 2018
  7. Panga V, Raghunathan S
    A cytokine protein-protein interaction network for identifying key molecules in
    rheumatoid arthritis
    PLoS One, e0199530. 10.1371,2018
  8. Saberwal G
    Bio-business in brief: What ails clinical trials?
    Curr. Sci., 115, 1648–1652, 2018
  9. Siddaramappa S, Viswanathan V, Thiyagarajan S, Narjala A
    Genomewide characterisation of the genetic diversity of carotenogenesis in bacteria
    of the order Sphingomonadales
    Microb. Genom., 10.1099/mgen.0.000172, 2018
  10. Mukherjee S, Saberwal G
    Managing India’s AIDS crisis in the 2000s: Quantitative modeling had impact. (Guest
    Editorial)
    Current Science 114, 2005–2006 (2018)
  11. Dash SP, Saberwal G
    The bio-incubation boom in India
    Curr. Sci., 115, 228–233, 2018
  12. Hariharan N, Ravi S, Pradeep BE, Subramanyam KN, Choudhary B, Srinivasan S, Khanchandani P
    A novel loss-of-function mutation in HACE1 is linked to a genetic disorder in a
    patient from India
    Hum Genome Var, 5, 17061; 10.1038/hgv.2017.61.,2018
  13. Saberwal G
    Regulatory harmonization: a view from India. (Guest Editorial)
    Curr. Sci.,114, 423–424, 2018
2017
  1. Melangath G, Sen T, Bawa P, Kumar R, Srinivasan S,Vijayraghavan U
    Functions for fission yeast splicing factors SpSlu7 and SpPrp18 in alternative splice-
    site choice and stress-specific regulated splicing
    PLOS ONE, Dec 13; 12(12):e0188159. 10.1038/s41598-017-17102-w., 2017
  2. Sreenivas A, Mahesh KM, Vinodkumar HS, Mukherjee G, Krishnamurthy H,
    Acharya KK, Bafna UD, Uma DK, Abhishekh B, Krishna S, Parchure A, Murali A,
    Jayshree RS

    Oestrogen Receptor-α binds the FOXP3 promoter and modulates regulatory T-
    cell function in human cervical cancer
    Sci Rep, 7(1):17289. 10.1038/s41598-017-17102-w, 2017
  3. Narayanaswamy PB, Baral K, Haller H, Dumler I, Acharya K, Kiyan Y
    Transcriptomic pathway analysis of urokinase receptor silenced breast cancer cells:
    a microarray study
    Oncotarget, 8 (60), PP 101572-101590, 2017
  4. Tammana D, Tammana TVS
    Chlamydomonas FAP265 is a tubulin polymerization promoting protein, essential for
    flagellar reassembly and hatching of daughter cells from the sporangium
    PLOS ONE, 10.1371/journal.pone.0185108,2017
  5. Tammana D, Tammana TVS
    Human DNA helicase, RuvBL1 and its Chlamydomonas homologue, CrRuvBL1 plays
    an important role in ciliogenesis
    Cytoskeleton, 74:251–259, 2017
  6. VijayRaghavan K, Saberwal G
    Bio-business in brief: The case for ambitious action in the public sector
    Curr. Sci., 113, 1841–1845, 2017
  7. Shukla P, Khodade VS, SharathChandra M, Chauhan P, Mishra S, Siddaramappa S,
    Pradeep BE, Singh A, Chakrapani H

    “On demand” redox buffering by H2S contributes to antibiotic resistance revealed
    by a bacteria-specific H2S donor
    Chem. Sci., 8, 4967–4972, 2017
  8. Ellingford JM, Campbell C, Barton S, Bhaskar S, Gupta S, Taylor RL, Sergouniotis PI,
    Horn B, Lamb JA, Michaelides M, Webster AR, Newman WG, Panda B, Ramsden
    SC, Black GC

    Validation of copy number variation analysis fornext-generation sequencing
    diagnostics
    Eur J Hum Genet, 25, 719–724, 2017
  9. Saberwal G
    Supporting start-ups (Guest Editorial)
    Curr. Sci., 113, 195–196, 2017
  10. Viswanathan V, Narjala A, Ravichandran A, Jayaprasad S, Siddaramappal S
    Evolutionary Genomics of an Ancient Prophage of the Order Sphingomonadales
    Genome Biol. Evol., 9(3), 646–658, 2017




2016
  1. Kouser K, Lavanya PG, Rangarajan LK, Aacharya K
    Effective Feature Selection for Classification of Promoter Sequences
    PLOS One, 11(12), e0167165, 2016
  2. Karthikeyan S, Bawa P, S Srinivasan
    hg19K: Addressing a significant lacuna in hg19-based variant calling
    Mol Genet Genomic Med, 5(1): 15–20, 2016
  3. Krishnan MN, Dhas K, Nair J, Palve V, Bagwan J, Siddappa G, Suresh A,
    Kekatpure DV, Kuriakose MA, Panda B

    Minimal DNA methylation signature in oral tongue squamous cell carcinoma links
    altered methylation with tumor attributes
    Mol. Cancer Res, 10.1158/1541-7786.MCR-15-0395, 2016
  4. Dey P, Panga V, Raghunathan S
    A cytokine signalling network for the regulation of inducible nitric oxide synthase
    expression in rheumatoid arthritis
    PLOS ONE, 11 (9): e0161306 10.1371/journal.pone.0161306, 2016
  5. Iyer D, Vartak SV, Mishra A, Goldsmith G, Kumar S, Srivastava M, Hegde M,
    Gopalakrishnan V, Glenn M, Velusamy M, Choudhary B, Kalakonda N, Karki SS,
    Surolia A, Raghavan SC

    Identification of a Novel BCL2 Specific Inhibitor that Binds Predominantly to the BH1
    Domain
    FEBS J, 283(18), 3408-37, 2016
  6. Galgalkar S, Siddaramappa S, Kalambur V
    Potentiometric Investigation of the Dynamics of Bacteriophage – Induced Potassium
    Ion Efflux in Escherichia coli
    Ely J Micro, 1(1): 103, 2016
  7. Pandey M, Kumar S, Goldsmith G, Srivastava M, Elango S, Choudhary B, Karki
    SS, Raghavan SC

    Identification and Characterization of Novel Ligase I Inhibitors
    Mol Carcinog, 2017 Feb; 56(2):550-566. 10.1002/mc.22516. Epub Jun 27 2016
  8. Mehrotra B, Saberwal G
    Patents protecting biologics or small molecule drugs are litigated, not others
    awarded to drug discovery companies
    Journal of IP Rights, 21, 149-156, 2016
  9. Kang Y, Brame K, Jetter J, Bothner B, Wang G, Thiyagarajan S, MC Dermott T
    Regulatory Activities of Four ArsR Proteins in Agrobacterium tumefaciens 5A
    Appl Environ Microbiol, 82(12), 3471-80,2016
  10. Goldsmith G, Rathinavelan T, Yathindra N
    Selective preference of parallel DNA triplexes is due to the disruption of Hoogsteen
    hydrogen bonds caused by the severe nonisostericity between the GGC and TAT
    triplets
    PLOS ONE, 11(3), 2016
  11. Keezhupalat SM, Naik A, Gupta S, Raghunathan S, Saberwal G
    An analysis of sponsors/collaborators of 69,160 drug trials registered with
    ClinicalTrials.gov
    PLOS ONE, 11(2), e0149416. 10.1371/journal.pone.0149416, 2016
  12. Padmanabhan B, Ramu M, Mathur S, Unni S, Thiyagarajan S
    Identification of New Inhibitors for Human SIRT1: An in-silico Approach
    Med Chem, 12(4), 347-61 2016
  13. Siddaramappa S
    Histophilus somni genomics and genetics
    Curr Top Microbiol Immunol, 396:49-70, 2016
  14. Kumar MM, Davuluri S, Poojar S, Mukherjee G, Bajpai AK, Dungarmal BU, Uma
    Devi K, Kallur PPR, Acharya KK, Jayshree RS
    Role of Estrogen Receptor Alpha in human cervical Cancer Associated Fibroblasts
    (CAFs): a transcriptomic study
    Tumour Biol, 37(4),4409-20, 2016
  15. Saberwal G
    India’s intellectual property-based biomedical start-ups
    Curr. Sci., 110, 167-171, 2016
  16. Raghavan CS, Choudhary B, Iyer D, Vartak S, Goldsmith G, Karki S, Surolia A
    Novel inhibitors of antiapoptotic Bcl-2 protein Indian patent number: 201641014968
2015
  1. Krishnan NM et al
    Integrated analysis of oral tongue squamous cell carcinoma identifies key variants
    and pathways linked to risk habits, HPV, clinical parameters and tumor recurrence
    F1000Research, 4: 1215 10.12688, 7302.1, 2015
  2. Nair J, Jain P, Chandola U, Palve V, Vardhan NR, Reddy RB, Kekatpure VD, Suresh
    A, Kuriakose MA, Panda B
    Gene and miRNA expression changes in squamous cell carcinoma of larynx and
    hypopharynx.
    Genes Cancer, 6 (7-8), 328-40, 2015
  3. Srivastava R, Kajuluri LP, Pathak N, Gupta CM, Sahasrabuddhe AA
    Oligomerization of coronin: Implication on actin filament length in Leishmania.
    Cytoskeleton, 72, 621–632, 2015
  4. Pathak BR, Breed AA, Apte S, Acharya KK, Mahale SD
    Cysteine-rich secretory protein 3 plays a role in prostate cancer cell invasion and
    affects expression of PSA and ANXA1.
    Mol Cell Biochem, 10.1007/s11010-015-2564-2, 2015
  5. Ganjiwale A, Cowsik SM
    Membrane Induced Structure of Novel Human Tachykinin Hemokinin-1 (hHK1)
    Biopolymer, 103, 702-10 10.1002/bip.22734, 2015
  6. Mathew J, Jagadeesh SM, Bhat M, Udhaya Kumar S, Thiyagarajan S, Srinivasan S.
    Mutations in ARSB in MPS VI patients in India
    Mol Genet Metab Rep, 4, 53-61. 10.1016/j.ymgmr.2015.06.002, 2015
  7. Chandrashekar DS, Dey P, Acharya KK
    GREAM: A Web Server to Short-List Potentially Important Genomic Repeat Elements
    Based on Over-/Under-Representation in Specific Chromosomal Locations, Such as
    the Gene Neighborhoods, within or across 17 Mammalian Species
    PLOS ONE, 10(7), 10.1371/journal.pone.0133647, 2015
  8. Duley A, Gowda V, Ganjiwale A, Raghothama S, Ramanathan G
    Effect of methylene group insertions on the structural rigidity of Aib containing
    helices
    Biopolymer Peptide Science, 10.1002/bip.22691, 2015
  9. Gupta CM, Thiyagarajan S, Sahasrabuddhe AA
    Unconventional actins and actin-binding proteins in human protozoan parasites
    Int. J. Parasitol., 45, 435-447, 2015
  10. Kouser, Rangarajan L, Chandrashekar DS, Acharya KK, Abraham EM
    Alignment free frequency based distance measures for promoter sequence
    comparison.
    In: Bioinformatics and Biomedical Engineering Third International Conference,
    IWBBIO 2015, Granada, Spain, April 15-17, Proceedings, Part II; Editors: Ortuño,
    Francisco, Rojas, Ignacio (Eds.) pp. 183-193, Springer 2015
  11. Bawa P, Zackaria S, Verma M, Gupta S, Srivatsan R, Chaudhary B, Srinivasan S
    Integrative analysis of normal long intergenic non-coding RNAs in prostate cancer
    PLoS One, 10.1371/journal.pone.0122143,2015
  12. Gupta S, Krishnan MN, Panda B
    Survival Signature in Squamous Cell Carcinoma of Head and Neck (HNSCC) And
    Applications Thereof Provisional patent application, 4316/CHE/2015
  13. Gupta S, Krishnan MN, Panda B
    Biomarkers Of Squamous Cell Carcinoma Of Head And Neck Prognostic Markers of
    Recurrence In Squamous Cell Carcinoma of Head And Methods Thereof Provisional
    patent application, 4031/CHE/2015
  14. Panda B
    miRNA Aberration(s) In Squamous Cell Carcinoma of Head And Neck (HNSCC) And
    Applications Thereof Provisional patent application, 2921/CHE/2015
  15. Panda B, Krishnan MN
    Methylation Signature in Squamous Cell Carcinoma of Head and Neck (HNSCC) And
    Applications Thereof Provisional patent application, 4888/CHE/2015
  16. Panda B
    Gene Expression Changes in Squamous Cell Carcinoma of Larynx and Hypopharynx
    and Applications Thereof Provisional patent application, 2969/CHE/2015
  17. Panda B
    Gene Signature in Squamous Cell Carcinoma of Head and Neck (HNSCC) And
    Applications Thereof Provisional patent application, 2970/CHE/2015




2014
  1. Gupta, S, Chaudhury, S and Panda, B
    A hybrid-computing environment for Burrows-Wheeler alignment for massive
    amount of short read sequence data.
    IEEE, 188-191 doi: 10.1109/MECBME.2014.6783237 (2014)
  2. Chandola, U, Das, R and Panda, B
    Role of the N6-methyladenosine RNA mark in gene regulation and its implications
    on development and disease.
    Briefings in Functional Genomics, doi: 10.1093/bfgp/elu039 (2014)
  3. Mrinal Srivastava, Mahesh Hegde, Kishore K. Chiruvella, Jinsha Koroth, Souvari
    Bhattacharya, Bibha Choudhary & Sathees C. Raghavan

    Sapodilla Plum (Achras sapota) Induces Apoptosis in Cancer Cell Lines and Inhibits
    Tumor Progression in Mice
    Nature Scientific Reports 4 : 6147 DOI: 10.1038/srep06147
  4. Mukherjee, K. Bowman, K.S., Fred A. Rainey, F. A., Siddaramappa, S.,
    Challacombe, J. F. and Moe, W.M.

    Dehalogenimonas lykanthroporepellens BL-DC-9T simultaneously transcribes many
    rdhA genes during organohalide respiration with 1,2-DCA, 1,2-DCP, and 1,2,3-TCP as
    electron acceptors.
    FEMS Microbiol Lett, 354, 111–118 (2014)
  5. Suravajhala, P and Acharya, K.
    Whither genome sequencing of Passer?
    Eur. Chem. Bull., 3, 1086-1087 (2014)
  6. Acharya, K.K.
    Capacities vs. jobs in bioinformatics and biotechnology: a few points to the
    attention of current students & job-seekers.
    In: Biotech Career Ready Reckoner 2014, Vivify Media Pvt. Ltd. & DBT, Government
    of India (pp.80–83) (2014).
  7. Sunil, M., Hariharan, A.K., Nayak, S., Gupta, S., Nambisan, S., Panda, B., Choudhary, B. and Srinivasan, S.
    The draft genome and transcriptome of Amaranthus hypochondriacus: A C4 dicot
    producing high-lysine edible pseudo-cereal.
    DNA Research, 21, 585-602 (2014)
  8. Siddaramappa, S., Challacombe, J. F., Petersen, J. M., Pillai, S. and Fellow, C.R.K.
    Comparative analyses of a putative Francisella conjugative element
    Genome, 57, 137-144 (2014)
  9. Bhagwat, S. et al.
    Acetylated alpha tubulin is reduced in individuals with poor sperm motility.
    Fertility and Sterility, 101: 95-104 (2014)
  10. Sunil, M. and Jinsha, K.
    Non-coding genomics. (A meeting report)
    Current Science, 106, 657-658 (2014)
  11. Pattnaik, S., Gupta, S., Rao, A A and Panda, B.
    SInC: an accurate and fast error-model based simulator for SNPs, Indels and
    CNVs coupled with a read generator for short-read sequence data.
    BMC Bioinformatics, 315, 40 (2014)
  12. Saberwal, G.
    On being a professional mutant
    Nature Biotechnology, 32, 106-107 (2014)
  13. Jaroslawski, S. and Saberwal, G.
    In eHealth in India today, the nature of work, the challenges and the finances: an
    interview based study.
    BMC Medical Informatics and Decision Making, 14, 1- 12 (2014)




2013
  1. Chitturi N, Balagannavar G, Chandrashekar DS, Abinaya S, Srini VS and Acharya KK
    TIPMaP: a web server to establish Transcript Isoform Profiles from reliable
    Microarray Probes.
    BMC Genomics, 14, 922-931 (2013)
  2. Ganjiwale A, Cowsik SM.
    Molecular recognition of Tachykinin Receptor selective agonists: Insights from
    structural studies.
    Mini Rev Med Chem. 7 Aug 2013.
  3. Sundararajan, PR, Balaji, PV and Yathindra, N.
    Obituary: VSR Rao (1931–2013)
    Current Science, 105, 1303-1304 (2013)
  4. Jain, P. , Krishnan, N.M. and Panda, B.
    Augmenting transcriptome assembly by combining de novo and genome-guided
    tools.
    Peer J., 1, e133 (2013)
  5. Ananth, P., Goldsmith, G. and Yathindra, N.
    An innate twist between Crick’s wobble and Watson & Crick base pairs.
    RNA, 19, 1038-1053 (2013)
  6. Kumari, S. and Saberwal, G.
    Patent maintenance by Indian pharma and bio-pharma companies.
    Asian Biotechnology Development Review, 15, 69-77 (2013)
  7. Bhagwat, S. et al.
    Endometrial receptivity: A revisit to functional genomics studies on human
    endometrium and creation of HGEx-ERdb.
    PLoS One, 8, e58419 (2013)
  8. Jaroslawski, S. and Saberwal, G.
    Case studies of innovative medical device companies from India: Barriers and
    enablers to development.
    BMC Health Services Research, 13, 199-207 (2013)
  9. Saberwal, G.
    Giving voice to India’s entrepreneurs.
    Nature Biotechnology, 31, 104-107 (2013)
  10. Agrawal, S. and Rao, M. R. S.
    Functional/signature network module for target pathway/gene discovery.
    Encyclopedia of Systems Biology, Springer Press, pgs 773-777 (2013)
  11. Agrawal, S. and Rao, M. R. S.
    Biological disease mechanism networks
    Encyclopedia of Systems Biology, Springer Press, pgs 113-118 (2013)


2012
  1. Srivastava, M. et al.
    An inhibitor of nonhomologous end-joining abrogates double-strand break repair
    and impedes cancer progression.
    Cell, 151, 1474-1487 (2012)
  2. Kaushik, S. Krishnarjuna, B., Raghothama, S., Aggarwal, S. Raghunathan, V. and
    Ganjiwale, A.

    Theoretical and in vitro studies of a C-terminal peptide from PGKC of Leishmania
    Mexicana Mexicana.
    Molecular and Biochemical Parasitology. 185, 27-35 (2012)
  3. Panda. B.
    Whither genomics diagnostics tests in India?
    Indian J. Med. Paediatr. Oncol., 33, 250-252 (2012)
  4. Srinivasan, S, Patil, AH, Verma, M, Bingham, JL and Srivatsan, R.
    Genome-wide profiling of RNA splicing in prostate tumor from RNA-seq data using
    virtual microarrays.
    J. Clinical Bioinformatics, 2, 21-33 (2012)
  5. Hegde, M. et al.G
    Novel Levamisole derivative induces extrinsic pathway of apoptosis in cancer cells
    and inhibits tumor progression in mice.
    PLoS One, 7(9), e43632 (2012)
  6. Krishnan NM, Gaur P, Choudhary R, Rao AA and Panda B
    COPS: A sensitive and accurate tool for detecting somatic copy number alterations
    using short-read sequence data from paired samples.
    PLoS One, 7(10), e47812 (2012)
  7. Saberwal, G
    Translating academic discoveries
    Current Science, 103, 767-769 (2012)
  8. Krishnan NM, Pattnaik S, Jain P, Gaur P, Choudhary R, et al.
    A draft of the genome and four transcriptomes of a medicinal and pesticidal
    angiosperm Azadirachta indica.
    BMC Genomics, 13, 464 (2012)
  9. Vangala, R.K., Singh, L. and Gupta, R.P.
    Bioparishodhana: A novel graphical interface integrating BLAST, CLUSTALW, primer3
    and restriction digestion tools.
    Bioinformation, 8, 639-643 (2012)
  10. Chiruvella, K.K., Sebastian, R., Sharma, S., Karande, A.A., Choudhary, B. and
    Raghavan, S.C.

    Time-dependent predominance of nonhomologous DNA end-joining pathways
    during embryonic development in mice.
    J. Mol Biol., 417, 197-211 (2012)
  11. Bajpai, A K, Davuluri, S, Chandrashekar, D S, Selvarajan, I, Dinakaran, M and
    Acharya, K K

    MGEx-Udb: A Mammalian Uterus Database for Expression-Based Cataloguing of
    Genes across Conditions, Including Endometriosis and Cervical Cancer.
    PLoS One, 7, e36776 (2012)
  12. Venkatachalam, S and Saberwal, G
    Bio-business in brief: A case for new drugs at generic prices from India
    Current Science, 102, 1375-1381 (2012)
  13. Jaroslawski, S and Pai, M
    Why are inaccurate tuberculosis serological tests widely used in the Indian private
    healthcare sector? A root-cause analysis
    Journal of Epidemiology and Global Health, 2, 39-50 (2012)
  14. Patil, A H et al.
    From data repositories to potential biomarkers: Application to prostate cancer
    Current Science, 102, 1111-1116 (2012)
  15. Soby, S, Sebastian, T E and Saberwal, G
    US patent holdings of Indian non-corporate entities
    Asian Biotechnology Development Review, 14, 21-33 (2012)
  16. Soby, S, Kandasamy, M and Saberwal, G
    Work outsourced to Indian biotech and pharma companies is not yet significantly
    innovative
    Current Science, 102 , 401-404 (2012)
  17. Pattnaik, S et al.
    Customisation of the exome data analysis pipeline using a combinatorial approach
    PLoS One, 7(1): e30080 (2012)
  18. Marimuthu, G, Kumari, S, Kandasamy, M, Raghunathan, S and Saberwal, G
    Patents protecting biologics or small molecule drugs are usually maintained
    Nature Biotechnology, 30, 50-53 (2012)
  19. Sathees C. Raghavan, Mrinal Srivastava, Subhas S Karki and Bibha Choudhary.
    Compounds as Inhibitor of DNA Double-Strand Break Repair, Methods and
    Applications thereof
    Ref. IP19597/VJ/ysr. Indian Patent Application Number: 2713/CHE/2012,
    WO2014006518A1




2011
  1. Prakash, A, Yogeeshwari, S, Sircar, S and Agrawal, S
    Protein domain of unknown function 3233 is a Translocation Domain of
    Autotransporter Secretory Mechanism in Gamma proteobacteria
    PLoS One, 6(1), e255570 (2011)
  2. Nambiar, M et al.
    Formation of a G-quadruplex at the BCL-2 major breakpoint region of the t(14;18)
    translocation in follicular lymphoma
    Nucleic Acids Research, 39, 936-948 (2011)
  3. Bateman, A et al.
    RNAcentral: a vision for an international database of RNA sequences
    RNA, 17, 1941-1946 (2011)
  4. Karthigeyan, D, Prasad, S B, Shandilya, J, Agrawal, S and Kundu, T K
    Biology of Aurora A Kinase: Implications in cancer manifestation and therapy
    Medicinal Research Reviews, 31, 757-793 (2011)
  5. Krishnan, N et al.
    De novo sequencing and assembly of Azadirachta indica fruit transcriptome
    Current Science, 101, 1553-1561 (2011) (Cover page article)
  6. Saberwal, G
    Caring for a severely disabled person
  7. Jaroslawski, S and Toumi, M
    Market access agreements for pharmaceuticals in Europe: diversity of approaches
    and underlying concepts
    BMC Health Services Research, 11, 259-265 (2011)
  8. Sebastian, T E, Pattnayak, J P, Soby, S and Saberwal, G
    Patent holdings of Indian pharmaceutical and biotechnology companies in
    international markets of different sizes
    Asian Biotechnology Development Review, 13, 17-37 (2011)
  9. Srinivasan, S
    Alternative splicing in eukaryotes: The norm, not an anomaly
    Current Science, 100, 813-814 (2011)




2010
  1. Agrawal, S, Nishant, K T and Rao, M R S
    Analysis of meiotic recombination hotspots: A bioinformatics approach
    Book chapter ISBN: 978-0-9807330-2-0 (Hard cover)
  2. Sebastian, A, Bender, A and Ramakrishnan, V
    Virtual activity profiling of drug molecules by 1D fingerprinting
    Molecular Informatics, 29, 773-779 (2010)
  3. Yathindra, N
    Structure of an enzyme revealed 80 years after it was crystallized – differential
    functional behaviour of plant and microbial ureases uncovered
    Current Science, 99, 566-568 (2010)
  4. Acharya, K K et al.
    A novel tissue-specific meta-analysis approach for gene-expression predictions,
    initiated with a mammalian gene expression testis database
    BMC Genomics, 11, 467-476 (2010)
  5. Ladha, J et al.
    Glioblastoma-specific protein interaction network identifies PP1A and CSK21 as
    connecting molecules between cell cycle-associated genes
    Cancer Research, 70, 6437-6447 (2010)
  6. Saberwal, G
    Bio-business in brief: A bit about technology transfer
    Current Science, 99, 177-180 (2010)
  7. Kapoor, M and Saberwal, G
    The new crossroads
    Biotech News, 5, 143-145 (2010)
  8. Saberwal, G
    Bio-business in brief: The debate over biosimilars
    Current Science, 98, 1575-1578 (2010)
  9. Saberwal, G
    Grants officers on deputation to national research laboratories
    Current Science, 98, 999 (2010)
  10. Selvi, B R, Batta, K, Kishore, A H, Mantelingu, K, Varier, R A, Balasubramanyam, K,
    Pradhan, S K, Dasgupta, D, Sriram, S, Agrawal, S and Kundu, T K
    Identification of a novel inhibitor of co-activator associated arginine methyl
    transferase 1 (CARM-1)-mediated methylation of histone H3-Arg 17
    The Journal of Biological Chemistry, 285, 7143-7152 (2010)
  11. Jeevitesh, M S, Behera, N, Jose, J, Kant, K and Dey, A
    Higher accuracy protein multiple sequence alignment by stochastic algorithm
    Nature Precedings
2009
  1. Sengupta, U, Ukil, S, Dimitrova, N and Agrawal, S
    Expression-based network biology identifies alteration in key regulatory pathways
    of Type 2 diabetes and associated risks/complications
    PLoS One, 4 (12) e8100 (2009)
  2. Saberwal, G
    Drug development in India: What does the future look like?
    Contemporary Perspectives: History and Sociology of South Asia, Ed. N Tyabji, 3,
    293-309 (2009)
  3. Saberwal, G
    A long march
    Biotech News, IV, 68-69, 75 (2009)
  4. Saberwal, G
    Bio-business in brief: The paradox of being a drug company
    Current Science, 97, 623-625 (2009)
  5. Ravindra, K C, Selvi, B R, Arif, M, Ashok Reddy, B A, Thanuja, G R, Agrawal, S,
    Pradhan, S K, Nagashayana, N, Dasgupta, D and Kundu, T K

    Inhibition of Lysine Acetyltransferase KAT3B/p300 activity by a naturally occurring
    hydroxynaphthoquinone, Plumbagin
    The Journal of Biological Chemistry, 284, 24453-24464 (2009)
  6. Saberwal, G
    Seeding a skilled workforce
    Nature Biotechnology, 27,773-775 (2009)
  7. Acharya, K K
    Book review: Career development in bioengineering and biotechnology
    By Madhavan, G., Oakley, B. and Ken, L. (eds)
    Springer Science + Business Media (New York)
    Current Science, 96, 293 (2009)
  8. Sebastian, T E, Chandra Bindu, Y and Saberwal, G
    Patent holdings of US biotherapeutic companies in major markets
    Drug Discovery Today, 14, 442-445 (2009)
  9. Arif, M, Pradhan, S K, Thanuja G R, Vedamurthy, B M, Agrawal, S, Dasgupta, D and
    Kundu, T K

    Mechanism of p300 specific histone acetyltransferase inhibition by small molecules
    Journal of Medicinal Chemistry, 52, 267-277 (2009)
  10. Saberwal, G
    The proposed 4-year B.S. programme
    Current Science, 96, 445-446 (2009)
  11. Sundaramoorthy, S, Chandra Bindu, Y, Mehdiratta, R and Saberwal, G
    The US patent holdings of homegrown Indian biotech and pharma companies
    Current Science, 96, 252-259 (2009)

2008
  1. Acharya, K K, Kasliwal, G and Haritha, H
    How do you choose your literature search tool(s)?
    Nature Precedings
  2. Alva, V, Syamala Devi, D P and Sowdhamini, R
    COILCHECK: an interactive server for the analysis of interface regions in coiled coils
    Protein and Peptide Letters, 15, 33-38 (2008)
  3. Ramakrishnan, N and Bhalla, U S
    Memory switches in chemical reaction space
    PLoS Computational Biology, 4: e1000122 (2008)
  4. Agrawal, S, Dimitrova, N, Nathan, P, Udaykumar, K, Sailakshmi, S, Sriram, S, Nair,
    M and Sengupta, S

    T2D-Db: An integrated platform to study the molecular basis of Type 2 diabetes
    BMC Genomics, 9, 320-331 (2008)
  5. Parida, D K, Mehdiratta, R and Saberwal, G
    How many patents does a bio-therapeutics company need?
    Nature Biotechnology, 26, 763-766 (2008)
  6. Devaguptapu, S, Mehdiratta, R and Saberwal, G
    Bio-business in brief: The case of Cytokinetics Inc.
    Current Science, 94, 1576-1581 (2008)
  7. Kishore H, Vedamurthy B M, Mantelingu K, Agrawal, S, Reddy B A, Roy S,
    Rangappa K and Kundu T K

    Specific small-molecule activator of aurora kinase a induces autophosphorylation in
    a cell-free system
    Journal of Medicinal Chemistry, 51, 792-797(2008)
  8. Sai Lakshmi, S and Agrawal, S
    piRNABank: A web resource on classified and clustered piwi interacting RNAs
    Nucleic Acids Research, 36, D173-177 (2008)
2007
  1. Mehdiratta, R, Parida, D K and Saberwal, G
    Bio-business in brief: The challenges of clinical trials
    Current Science, 93, 1367-1375 (2007)
  2. Mehdiratta, R and Saberwal, G
    Bio-business in brief: Many a monoclonal
    Current Science, 93, 789-796 (2007)
  3. Mehdiratta, R and Saberwal, G
    Bio-business in brief: The case of conotoxins
    Current Science, 92, 39-45 (2007)


2006
  1. Agrawal, S , Chetan, K and Rao, M R S
    CREMOFAC – a database of chromatin remodelling factors
    Bioinformatics, 22, 2940-2944 (2006)
  2. Rathinavelan, T and Yathindra, N
    Base triplet nonisomorphism strongly influences DNA triplex conformation: Effect of
    nonisomorphic GGC and AAT triplets and bending of DNA triplexes
    Biopolymers, 82, 443-461 (2006)
  3. Acharya K K
    The biotech-bioinfo interface in the context of education and growth of the
    biotechnology industry in India today
    Biovistas, 1, 7-13 (2006)
  4. Saberwal, G
    New pharma-biotech company formation in India
    Nature Biotechnology, 24, 499-501 (2006)


2005
  1. Rathinavelan, T and Yathindra, N
    Molecular dynamics structures of peptide nucleic acid DNA hybrid in the wild-type
    and mutated alleles of Ki-ras proto-oncogene
    FEBS Journal, 272, 4055-4070 (2005)
  2. Yathindra, N
    M. Sundaralingam (1931-2004): a distinguished nucleic acid researcher
    Acta Crystallographica, D61, 845-849 (2005)
  3. Rajalalitha, P and Vali, S
    Molecular pathogenesis of oral submucos fibrosis – a collagen metabolic disorder
    Journal of Oral Pathology Medicine, 34, 321-328 (2005)
  4. Saberwal, G
    English composition as a professional skill
    Current Science, 88, 848 (2005)
  5. Kant, R
    Sweet proteins – Potential replacement for artificial low calorie sweeteners
    Nutrition Journal, 4, 5 (2005)
  6. Sandhu, K S and Acharya, K K
    ExPrimer: To design primers from exon-exon junctions
    Bioinformatics, 21, 2091-2092 (2005)
  7. Kant, R, Rajasekaran, M B and Suryanarayanarao, R
    Sweet and taste modifying proteins – Comparative modeling and docking studies of
    curculin, mabinlin, miraculin with the T1R2-T1R3 receptor
    Internet Electronic Journal of Molecular Design, 4, 106-123 (2005)
  8. Venkatesh, S and Bansal, M
    Role of informatics in biodiversity conservation: overview of available resources.
    In Biodiversity, Status and Prospects (Eds. P. Tandon, M. Sharma and R. Swarup)
    Narosa Publishing House, New Delhi, 134-145 (2005)
  9. Rekha, N, Machado, S M, Narayanan, C, Krupa, A and Srinivasan, N
    Interaction interfaces of protein domains are not topologically equivalent across
    Proteins, 58, 339-353 (2005)
2004
  1. Saberwal, G
    Biotechnology incubation in India
    Business incubation: Initiatives in India‘ Ed. R. K. Lagu brought out by NSTEDB, DST
    (2004)
  2. Kanhere, A and Bansal, M
    DNA bending and curvature: A turning point in DNA function
    Proceedings of the Indian Academy of Sciences, B70, 239-254 (2004)
  3. Venkatesh, S and Bansal, M
    Role of informatics in food biotechnology and safety
    Indian Food Industry, 23, 32-36 (2004)

2003
  1. Bansal, M
    DNA structure: Revisiting the Watson-Crick double helix
    Current Science, 85, 1556-1563 (2003)
  2. Madhumalar, A and Bansal, M
    Sequence dependent structural features of A3T3 vs(AT)3 from molecular dynamics
    study
    Recent Trends in Biophysical Research (ed. N. Maiti), Calcutta, pp. 10-16 (2003)
  3. Madhumalar, A and Bansal, M
    Structural insights into the effect of hydration and ions on A-tract DNA: A molecular
    dynamics study
    Biophysics Journal, 85, 1805-1816 (2003)
  4. Venkatesh, S and Bansal, M
    Role of informatics in biodiversity conservation: overview of available resources
    Proceedings of the 72nd Annual Session & National Symposium on
    Biodiversity (2003)
  5. Bansal, M and Sastri, S
    Bioinformatics training – An Indian experience
    Web03 Handbook (2003)
  6. Kanhere, A and Bansal, M
    An assessment of three dinucleotide parameters to predict DNA curvature by
    quantitative comparison to experimental data
    Nucleic Acids Research, 31, 2647-2658 (2003)
  7. Ghosh, A and Bansal, M
    A glossary of DNA structures from A to Z
    Acta Crystallographica, D59, 620-626 (2003)
  8. Behera, N
    Book Review: Molecular Systematics and Evolution: Theory and Practice. R. DeSalle,
    G. Giribet and W. Wheeler (eds)
    Birkhauser Verlag, P.O. Box 133, CH-4010 Basel, Switzerland
    Current Science, 84, 99-100 (2003)
2002
  1. Saberwal, G
    Institute of Bioinformatics and Applied Biotechnology: Bioinformatics training with a
    difference
    Current Science, 83, 794 (2002)